BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0091.p (404 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAP49320.1| Uvs077 [uncultured bacterium] 165 2e-39 gb|EAA75744.1| conserved hypothetical protein [Gibberella zeae P... 164 5e-39 gb|AAO64249.1| unknown [Fusarium sporotrichioides] 129 1e-28 gb|EAI06801.1| unknown [environmental sequence] 96 1e-18 ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidore... 96 1e-18 >gb|AAP49320.1| Uvs077 [uncultured bacterium] Length = 760 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 121/185 (65%), Gaps = 11/185 (5%) Query: 1 MTFTPPSWTRKFSEEDL----KFRNHSTWEYG--YWWVEFGGMMDTIADNEAIRDELLAI 54 + FT P + +S E++ + +N + + G +WW+EFGG++DTI +E I+ EL I Sbjct: 215 VVFTKPDFA--YSHEEIAAIPRCKNINGNDSGCKFWWLEFGGVLDTIYQSEDIKWELWKI 272 Query: 55 MLGVWDHIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAY 114 + G+WD+IKNSG + EN L+W G +PGKRESRRF G Y+L Q DI FDD ++Y Sbjct: 273 VYGIWDYIKNSGEFSDVENLTLEWVGTIPGKRESRRFEGHYMLKQQDIVTQQIFDDAVSY 332 Query: 115 GGWPMDTHPPQGIDATELNPAHQPF-SRYVYGIPLKALISANVENLMFAGRNISATHIAF 173 GGW +D HP +GI + + PA F S+ +Y IP + +S +++NL AGR ISATH+AF Sbjct: 333 GGWAIDLHPAEGIYSDK--PACSQFHSKGIYQIPYRCFVSRDIDNLFLAGRIISATHMAF 390 Query: 174 SSTRV 178 STRV Sbjct: 391 GSTRV 395 >gb|EAA75744.1| conserved hypothetical protein [Gibberella zeae PH-1] Length = 757 Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/257 (34%), Positives = 142/257 (55%), Gaps = 27/257 (10%) Query: 1 MTFTPPSWTRKFSEEDL-KFRNHSTWEYG--YWWVEFGGMMDTIADNEAIRDELLAIMLG 57 + F PS+ K E ++ +F++ ST E G WW+E+GG +DTI D E I+ EL ++ G Sbjct: 224 VKFVAPSYALKDVETEIPRFKSFSTKEMGCNLWWIEYGGRLDTIHDTEEIKWELWKVVYG 283 Query: 58 VWDHIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAYGGW 117 VWD+ KNSG PE+E L+W G +PGKRESRRF+G ++ Q DI + D +++GGW Sbjct: 284 VWDYFKNSGRFPEAETLTLEWVGTIPGKRESRRFVGPKMMVQQDIVEQRFHSDAVSFGGW 343 Query: 118 PMDTHPPQGIDATELNPAHQPFSRYVYGIPLKALISANVENLMFAGRNISATHIAFSSTR 177 +D HP G S+ VY IP +++ +++ NLM+ GR ISA+H+AF+STR Sbjct: 344 SLDLHPADGWH-----------SKGVYQIPFSSMVCSDIPNLMYGGRIISASHVAFASTR 392 Query: 178 VXXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQVQHK-----LLKQDAYLPG--I 230 V + + L + + ++ +Q+ + K L++ ++PG + Sbjct: 393 V------MATCGANANALGIAASLCKKNTIDPVQLLQKAEMKNFQLELMRFGQFIPGYKL 446 Query: 231 TPARDNLASSAIVRASS 247 +D + S+ + SS Sbjct: 447 EDEKDLIRSATKIEDSS 463 >gb|AAO64249.1| unknown [Fusarium sporotrichioides] Length = 760 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/259 (32%), Positives = 136/259 (52%), Gaps = 31/259 (11%) Query: 1 MTFTPPSWTRKFSEEDL-KFRNHSTWEYG--YWWVEFGGMMDTIADNEAIRDELLAIMLG 57 + F PS+ K E ++ +F++ ST E G WW+E+GG +DTI D E I+ EL ++ G Sbjct: 224 VKFVAPSYALKDVEAEIPRFKSFSTKEMGCNLWWIEYGGRLDTIHDTEEIKWELWKVVYG 283 Query: 58 VWDHIKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQA--THFDDVIAYG 115 VWD+ KNSG PE+EN L+W G +PGKRESRRF G+Y L + T V+ + Sbjct: 284 VWDYFKNSGRFPEAENLTLEWVGTIPGKRESRRF-GQYSLLGLHSRGSILTLSLSVVGHS 342 Query: 116 GWPMD-THPPQGIDATELNPAHQPFSRYVYGIPLKALISANVENLMFAGRNISATHIAFS 174 + + P+ + A VY IP +++ + + NLM+ GR ISA+H+AF+ Sbjct: 343 IYTLRMVSSPKWMAAPS-----------VYQIPFSSMVCSEIPNLMYGGRIISASHVAFA 391 Query: 175 STRVXXXXXXXXXXXXXXXXXXVQSGLTLDDALHDIEFIQQ-----VQHKLLKQDAYLPG 229 STRV V + L A+ ++ +Q+ Q +L++ ++PG Sbjct: 392 STRV------MATCGANANALGVAASLCKAKAVDPVQLLQKGEMKNFQLELMRFGQFIPG 445 Query: 230 --ITPARDNLASSAIVRAS 246 + A+D + S++ + S Sbjct: 446 YKLEDAKDLVRSASKIEGS 464 >gb|EAI06801.1| unknown [environmental sequence] Length = 522 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 85/188 (45%), Gaps = 18/188 (9%) Query: 3 FTPPSWTRKFSEEDLKF-RNHSTWEYGYWWVEFGGMMDTIADNEAIRDELLAIMLGVWDH 61 F W + +D + R+H +G W+ E G D + D E IRD L + G + Sbjct: 124 FPETPWALPLTMDDFPYPRDH----HGQWFWESGFDKDPLHDAEGIRDWNLRAVFGAFQA 179 Query: 62 IKNSGNHPESENWALDWFGFVPGKRESRRFIGKYLLTQTDIEQATHFDDVIAYGGWPMDT 121 +KN G + N L W ++ G RESRR +G +LTQ DI F D W +D Sbjct: 180 MKNGGGAQDHTNAKLTWIAYIGGPRESRRVLGDVVLTQEDIVSKREFSDGCVPSTWSIDL 239 Query: 122 HPPQGIDATELNPAHQPF-----------SRYVYGIPLKALISANVENLMFAGRNISATH 170 H P+ A + PF Y Y IP + L S ++NL AGR IS TH Sbjct: 240 HYPKEQYAQKF--PDNPFISIAVHDRRVDRSYGYPIPYRCLYSRTIDNLFLAGRCISVTH 297 Query: 171 IAFSSTRV 178 A +TRV Sbjct: 298 RALGTTRV 305 >ref|NP_811371.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gb|AAO77565.1| putative pyridine nucleotide-disulphide oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] Length = 626 Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 6/158 (3%) Query: 27 YGYWWVEFGGMMDTIADNEAIRDELLAIMLGVWDHIKN-SGNHPESENWALDWFGFVPGK 85 YG W E G + I D+E IRD + ++ W ++KN S + +L+W ++ GK Sbjct: 401 YGEWTWETGMNKNQINDSEQIRDYGMLVIYSNWSYLKNQSERRKYYKKRSLEWVAYIAGK 460 Query: 86 RESRRFIGKYLLTQTDIEQATHFDDVIAYGGWPMDTHPP-----QGIDATELNPAHQPFS 140 RESRR +G Y+L + D+ + +D W +D H P + E Sbjct: 461 RESRRLLGDYVLKEDDLTKHVAHEDASFTTTWSIDLHRPDPENTRYFPGREFKATTDHVV 520 Query: 141 RYVYGIPLKALISANVENLMFAGRNISATHIAFSSTRV 178 Y Y +P + L S N++NL AGRNIS TH+A + RV Sbjct: 521 IYPYPVPYRCLYSRNIDNLFMAGRNISVTHVALGTVRV 558 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.135 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 614,752,852 Number of extensions: 25151482 Number of successful extensions: 49581 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 49585 Number of HSP's successfully gapped: 16 Length of query: 404 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 276 Effective length of database: 409,704,906 Effective search space: 113078554056 Effective search space used: 113078554056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)