BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0081.p
         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_815890.1| conserved domain protein [Enterococcus faecalis...    94   1e-18
gb|EAJ91596.1| unknown [environmental sequence]                        87   1e-16
emb|CAA73291.1| polysaccharidase [Rhizobium leguminosarum]             71   1e-11

>ref|NP_815890.1| conserved domain protein [Enterococcus faecalis V583]
 gb|AAO81960.1| conserved domain protein [Enterococcus faecalis V583]
          Length = 1259

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 84/170 (49%), Gaps = 27/170 (15%)

Query: 36  TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95
           TTYYVD   GN+   G S  SAW+   KVN   F PGD +LL A   W+NQ L  KG+GT
Sbjct: 52  TTYYVDGEGGNNANDGQSPASAWRDFEKVNQTEFQPGDHVLLNAQSTWNNQLLHPKGNGT 111

Query: 96  EGSPIVVD------------GSGSKPLIHFGNTSVNGE-----GFGVRLRNVSYWEINNL 138
               IV+D             +  +P+I+ G T   G         V+L N  YW+I+NL
Sbjct: 112 AAQKIVIDFYDTNDKGETIFETTRRPIINGGGTYSTGTFKRAISGAVQLVNQEYWDISNL 171

Query: 139 EITSGEQLT---------DMRRQGVLVVGEGSGAGNFRHIYIKNLNIHDI 179
           E+T+  +L          D +R G+LV+G       F  + I+N  +HD+
Sbjct: 172 EVTNTPELDNLEGYKKPGDAQRAGILVLGYEQNR-TFNSVTIRNNYVHDV 220


>gb|EAJ91596.1| unknown [environmental sequence]
          Length = 521

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 92/165 (55%), Gaps = 30/165 (18%)

Query: 36  TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95
           TTYY+    GNDN  G SE   +K L K+N++TFNPGD+I  K+G  W   Y  L+GSG+
Sbjct: 68  TTYYISYNSGNDNNDGKSEDKPFKNLGKINSITFNPGDKIKFKSGETWKG-YFKLRGSGS 126

Query: 96  EGSPIVVD--GSGSKPLIHFGNTSVNGEGF--GVRLRNVSYWEINNLEITSGE------- 144
           E  PIV++   SG+KP+I       +G+G+   V + N  Y  I+ LE+T+         
Sbjct: 127 ENKPIVIENYASGNKPVI-------DGDGYQAAVFIENREYVTISGLELTNQASHKNSNG 179

Query: 145 --QLTDM-------RRQGVLVVGEGSGAGNFRHIYIKNLNIHDIF 180
             +L +         R G+LV+   SG+ N ++I + +L I++I+
Sbjct: 180 SVKLMNQSSRSGLNERYGLLVL--RSGSNNVKNISLSDLKINNIY 222


>emb|CAA73291.1| polysaccharidase [Rhizobium leguminosarum]
          Length = 540

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 12/115 (10%)

Query: 36  TTYYVDSALGNDNAAGNSETSAWKTLTKVNTVTFNPGDRILLKAGGVWSNQYLDLKGSGT 95
           T YYV+SA G++  +G SE S + TL+ V  +  NPGD +LL AG V++ Q+ DLK SG+
Sbjct: 2   TVYYVNSATGSNQNSGVSEQSPFATLSAVEALKLNPGDSVLLAAGSVFNEQF-DLKYSGS 60

Query: 96  EGSPIVVD--GSGSKPLIHFGNTSVNGEGFGVRLRNVSYWEINNLEI--TSGEQL 146
             +PI +   G G  P+IH         G G+   N S   I N++I  TSG  +
Sbjct: 61  IAAPITIGSYGVGDAPVIH-------SSGDGIHTSNASNIVIENIKISDTSGAAI 108


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.313    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 288,057,492
Number of extensions: 13313511
Number of successful extensions: 19601
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 19602
Number of HSP's successfully gapped: 4
Length of query: 201
Length of database: 757,237,578
Length adjustment: 120
Effective length of query: 81
Effective length of database: 431,425,698
Effective search space: 34945481538
Effective search space used: 34945481538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 123 (52.0 bits)