BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0080.p
         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_623730.1| predicted Transcriptional regulator [Thermoanae...    58   6e-08

>ref|NP_623730.1| predicted Transcriptional regulator [Thermoanaerobacter
          tengcongensis]
 gb|AAM25334.1| predicted Transcriptional regulator [Thermoanaerobacter
          tengcongensis]
          Length = 123

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 1/79 (1%)

Query: 1  MHSIYERIEYLIKRQGLTKKAFSEQLKISTGNMGDWKRGKSTPGTHKLIEIAAFFDVSLD 60
          M+S+ ERI Y  K+  LT  A S+   +S GN+ D +  KS P ++ LI++    +VS+D
Sbjct: 1  MNSVGERIRYARKKNNLTIPALSKLTGLSPGNLSDLENNKSMPSSNALIKLKNALNVSID 60

Query: 61 WLILGKQNANTLKESGEDY 79
          WL+ G+   + +KE  E Y
Sbjct: 61 WLLTGEM-PSEVKEEEEKY 78


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 176,579,370
Number of extensions: 6109287
Number of successful extensions: 11033
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 11051
Number of HSP's successfully gapped: 2
Length of query: 122
Length of database: 757,237,578
Length adjustment: 86
Effective length of query: 36
Effective length of database: 523,739,064
Effective search space: 18854606304
Effective search space used: 18854606304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)