BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0072.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977425.1| DNA-binding response regulator, LuxR family [Ba... 265 4e-70 ref|NP_350019.1| Response regulator (CheY-like receiver domain a... 253 2e-66 ref|NP_388423.1| similar to two-component response regulator [Yd... 248 5e-65 ref|NP_629592.1| putative two-component system response regulato... 176 3e-43 ref|NP_641565.1| two-component system regulatory protein [Xantho... 169 5e-41 >ref|NP_977425.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 214 Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/214 (59%), Positives = 170/214 (79%), Gaps = 2/214 (0%) Query: 4 YKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMG 63 Y +LIVDDH VVREGLKLI+ET++ FQ++GEA NG EAL I++ PDVILMDLNMP M Sbjct: 3 YNVLIVDDHFVVREGLKLIIETSDSFQIIGEATNGEEALSFIEKKKPDVILMDLNMPKMS 62 Query: 64 GLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRG 123 GLET++ L K+ + P+IILTTYNED+LM+ G+ +GAKGYLLKDT RENLFR +E+A+RG Sbjct: 63 GLETIEVLNKKQNHTPIIILTTYNEDELMLKGIELGAKGYLLKDTDRENLFRTLEAAIRG 122 Query: 124 ETLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISE 183 E LL +IME+++ + +K+ + E LT+KE +L+A+ARG K+K IA DMGI+E Sbjct: 123 EILLQPNIMEKIVNYK--RKEIHANVVEENNLTEKELFVLKAIARGNKNKDIAFDMGIAE 180 Query: 184 RTVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 RTVKA+LT IYNKLGV+SRS+AVAV++E+ ++ Sbjct: 181 RTVKAYLTNIYNKLGVNSRSEAVAVSIEKKLIHF 214 >ref|NP_350019.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] pir||D97321 response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [imported] - Clostridium acetobutylicum gb|AAK81359.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum] Length = 217 Score = 253 bits (646), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/213 (59%), Positives = 167/213 (78%), Gaps = 2/213 (0%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 +IL+VDDH VVREGLKLI E ++++VVGEAENG +AL +I EL PDVILMDL+MP M G Sbjct: 5 RILVVDDHFVVREGLKLIFELEDEYEVVGEAENGEQALLLIDELKPDVILMDLSMPKMSG 64 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 L+ ++ LK++ +SIP+IILTTYNED+L+ GL++GAKGYLLKDT+RE L R +ESA RGE Sbjct: 65 LDVLKALKEKENSIPIIILTTYNEDNLIKEGLSLGAKGYLLKDTTREELIRTVESAFRGE 124 Query: 125 TLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISER 184 LL ++ + + ++K+S + A +T++E ILQ++ARG KSK IA DMGISER Sbjct: 125 LLLQPEVSK--VLFNVKKKESTINTSFNASITERELFILQSIARGCKSKEIAFDMGISER 182 Query: 185 TVKAHLTAIYNKLGVDSRSQAVAVALERGILEM 217 TVKAHLT IY+KL V SRS+AVA A+E+GI+ + Sbjct: 183 TVKAHLTNIYSKLQVSSRSEAVAKAIEKGIIHV 215 >ref|NP_388423.1| similar to two-component response regulator [YdfH] [Bacillus subtilis] pir||G69780 two-component response regulator [YdfH] homolog ydfI - Bacillus subtilis dbj|BAA19376.1| PROBABLE REGULATORY COMPONENT OF SENSORY TRANSDUCTION SYSTEM. [Bacillus subtilis] emb|CAB12349.1| ydfI [Bacillus subtilis subsp. subtilis str. 168] Length = 213 Score = 248 bits (634), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 119/211 (56%), Positives = 166/211 (78%), Gaps = 4/211 (1%) Query: 5 KILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVMGG 64 K+LIVDDHLVVREGLKL++ETN+Q+ ++GEAENG A+ + EL PD+ILMDL MP M G Sbjct: 3 KVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSG 62 Query: 65 LETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVRGE 124 LE ++++K++ + P+IILTTYNED LMI G+ +GAKGYLLKDTS E LF +++A+RG Sbjct: 63 LEAIKQIKEKHDT-PIIILTTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGN 121 Query: 125 TLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGISER 184 LL DI++R+ + Q + + Q +LT+KE I+L+A+A+G KSK IA D+G+SER Sbjct: 122 VLLQPDILKRL---QEIQFERMKKQRNETQLTEKEVIVLKAIAKGLKSKAIAFDLGVSER 178 Query: 185 TVKAHLTAIYNKLGVDSRSQAVAVALERGIL 215 TVK+ LT+IYNKLG +SR++AV +A+++GIL Sbjct: 179 TVKSRLTSIYNKLGANSRTEAVTIAMQKGIL 209 >ref|NP_629592.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] emb|CAB76009.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 224 Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 95/214 (44%), Positives = 136/214 (63%), Gaps = 7/214 (3%) Query: 3 VYKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPVM 62 V +LIVDDH VVR+GL+ + E+ F+V+GEA G EA+ L PDV+LMDL MP Sbjct: 16 VISLLIVDDHPVVRDGLRGMFESAPGFRVLGEAAGGTEAVERAAALDPDVVLMDLRMPGG 75 Query: 63 GGLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAVR 122 G+ ++EL ++G+ V++LTTY+ D + + GA GYLLKD R++LF + +A + Sbjct: 76 SGVAAIRELTRRGARARVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDDLFTAVRAAAQ 135 Query: 123 GETLLSADIMERVITA-RAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGI 181 G T+LS + R+++A RA + P L+ +E +L VARG +K IA ++ I Sbjct: 136 GRTVLSPAVASRLVSAVRAPKTPGAEP------LSAREREVLALVARGTSNKEIARELFI 189 Query: 182 SERTVKAHLTAIYNKLGVDSRSQAVAVALERGIL 215 SE TVK HLT +Y KLGV+ R+ AVA A +RGIL Sbjct: 190 SEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 169 bits (427), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 84/210 (40%), Positives = 137/210 (65%) Query: 2 IVYKILIVDDHLVVREGLKLILETNEQFQVVGEAENGAEALPMIKELHPDVILMDLNMPV 61 ++ ++ +VDD +VR+G++ +L ++ +VV EA +G +A+ I ++ PDV+LMD+ MPV Sbjct: 1 MMIRVCLVDDQTLVRQGIRSLLALDDGIEVVAEASDGKQAVEQIPQIQPDVVLMDMRMPV 60 Query: 62 MGGLETMQELKKQGSSIPVIILTTYNEDDLMISGLAMGAKGYLLKDTSRENLFRNIESAV 121 M GLE +Q L + G+ P IILTT+++D L+++GL GAKGYLLKD S E L I + Sbjct: 61 MSGLEALQMLSRNGALPPTIILTTFDDDQLVLAGLKAGAKGYLLKDVSLEQLVGAIRTVA 120 Query: 122 RGETLLSADIMERVITARAQQKDSISPQNEAARLTDKETIILQAVARGFKSKVIAIDMGI 181 G +L+ + +R+++ ++ + LTD+ET IL+ +A GF +K IA +G+ Sbjct: 121 DGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPLTDRETEILRLMASGFSNKEIANSLGV 180 Query: 182 SERTVKAHLTAIYNKLGVDSRSQAVAVALE 211 +E T+K H++ I +KLGV R++AV A E Sbjct: 181 AEGTIKNHVSNILSKLGVRDRTRAVLKAFE 210 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 273,051,456 Number of extensions: 10078874 Number of successful extensions: 46900 Number of sequences better than 1.0e-05: 4249 Number of HSP's gapped: 46517 Number of HSP's successfully gapped: 4264 Length of query: 217 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 96 Effective length of database: 428,710,599 Effective search space: 41156217504 Effective search space used: 41156217504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)