BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0055.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_657562.1| hypothetical protein predicted by GeneMark [Bac... 166 1e-40 ref|NP_833388.1| hypothetical protein [Bacillus cereus ATCC 1457... 166 2e-40 ref|NP_979984.1| conserved hypothetical protein [Bacillus cereus... 165 4e-40 ref|NP_243198.1| BH2332~unknown conserved protein in B. subtilis... 160 7e-39 ref|NP_389679.1| alternate gene name: yoxJ [Bacillus subtilis] >... 153 1e-36 >ref|NP_657562.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_845982.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP27468.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 146 Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 73/139 (52%), Positives = 101/139 (72%) Query: 31 SNWFMNSIAFWTFVLLGCMCIGGYFMFRKFLKVLPKADGKSKLDWQNYWVERSRPLWSDE 90 WF I WT +LLG M IGGYFMFRKFLK LPK DG S LDW+ +++ ++R LW DE Sbjct: 3 EGWFSWFIVLWTVILLGLMSIGGYFMFRKFLKRLPKEDGMSILDWEEHYINKTRHLWDDE 62 Query: 91 MKAFLDQLVQPVPSPFRDIAKHSIAAEIGKIAVESHAPEVTREHCIRGYIVATPRRDNRF 150 K L++LV PVP FRD+AK IA +IG++A++ A ++T++ I+GYI+ATP+RD++F Sbjct: 63 QKQLLEELVSPVPELFRDVAKSKIAGKIGELALQEKASQITQDLIIKGYIIATPKRDHKF 122 Query: 151 LISFLEKNGIDYSLYQHLI 169 L+ L++ IDYS YQ L+ Sbjct: 123 LVKKLQEKKIDYSHYQSLL 141 >ref|NP_833388.1| hypothetical protein [Bacillus cereus ATCC 14579] gb|AAP10589.1| hypothetical protein [Bacillus cereus ATCC 14579] Length = 143 Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 73/139 (52%), Positives = 103/139 (74%) Query: 31 SNWFMNSIAFWTFVLLGCMCIGGYFMFRKFLKVLPKADGKSKLDWQNYWVERSRPLWSDE 90 WF I WT +LLG M IGGYFMFRKFLK LPK DG S LDW+ +++ ++R LW+DE Sbjct: 3 EGWFSWFIVLWTVILLGLMSIGGYFMFRKFLKRLPKEDGMSILDWEEHYINKTRHLWADE 62 Query: 91 MKAFLDQLVQPVPSPFRDIAKHSIAAEIGKIAVESHAPEVTREHCIRGYIVATPRRDNRF 150 K L++LV PVP FRD+AK IA +IG++A++ +A ++T++ I+GYI+ATP+RD++F Sbjct: 63 QKQLLEELVSPVPELFRDVAKSKIAGKIGELALQENASQITQDLIIKGYIIATPKRDHKF 122 Query: 151 LISFLEKNGIDYSLYQHLI 169 LI L++ IDYS Y+ L+ Sbjct: 123 LIKKLQEKKIDYSNYRSLL 141 >ref|NP_979984.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS42592.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 146 Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 72/139 (51%), Positives = 101/139 (72%) Query: 31 SNWFMNSIAFWTFVLLGCMCIGGYFMFRKFLKVLPKADGKSKLDWQNYWVERSRPLWSDE 90 WF I WT +LLG M IGGYFMFRKFLK LPK DG S LDW+ +++ ++R LW DE Sbjct: 3 EGWFSWFIVLWTVILLGLMSIGGYFMFRKFLKRLPKEDGMSILDWEEHYINKTRHLWDDE 62 Query: 91 MKAFLDQLVQPVPSPFRDIAKHSIAAEIGKIAVESHAPEVTREHCIRGYIVATPRRDNRF 150 K L++LV PVP FRD+AK IA +IG++A++ A ++T++ I+GYI+ATP+RD++F Sbjct: 63 QKQLLEELVSPVPELFRDVAKSKIAGKIGELALQEKASQITQDLIIKGYIIATPKRDHKF 122 Query: 151 LISFLEKNGIDYSLYQHLI 169 L+ L++ IDYS Y+ L+ Sbjct: 123 LVKKLQEKEIDYSHYESLL 141 >ref|NP_243198.1| BH2332~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||D83941 hypothetical protein BH2332 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06051.1| BH2332~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 151 Score = 160 bits (406), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 100/140 (71%) Query: 31 SNWFMNSIAFWTFVLLGCMCIGGYFMFRKFLKVLPKADGKSKLDWQNYWVERSRPLWSDE 90 S WFM I WT VL+ M IGGYFMFRKFLK LPK DGKS LDWQ+Y++E++ LW DE Sbjct: 2 STWFMWFIVLWTIVLITLMFIGGYFMFRKFLKRLPKEDGKSILDWQDYYIEKTLHLWGDE 61 Query: 91 MKAFLDQLVQPVPSPFRDIAKHSIAAEIGKIAVESHAPEVTREHCIRGYIVATPRRDNRF 150 KA L++LV+PVP FRD+AK IA +IG++A++ A + E IRGYI+ATP+RD++F Sbjct: 62 EKALLNELVEPVPELFRDVAKGKIAGKIGELALDEDASRIDTELIIRGYILATPKRDHKF 121 Query: 151 LISFLEKNGIDYSLYQHLIK 170 L L + ID S Y+ L + Sbjct: 122 LRKKLAELNIDVSPYEPLFE 141 >ref|NP_389679.1| alternate gene name: yoxJ [Bacillus subtilis] sp|P45711|YNEK_BACSU Hypothetical protein yneK pir||D69891 yneK protein - Bacillus subtilis emb|CAA97597.1| YneK [Bacillus subtilis] emb|CAB13680.1| yneK [Bacillus subtilis subsp. subtilis str. 168] Length = 142 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 70/140 (50%), Positives = 97/140 (69%) Query: 31 SNWFMNSIAFWTFVLLGCMCIGGYFMFRKFLKVLPKADGKSKLDWQNYWVERSRPLWSDE 90 WF+ I FW +++ + IGG+FMFRKFLK LPK DG+S+LDWQ+Y++E SR LW+DE Sbjct: 3 EGWFLWFILFWVIMMVVLLSIGGFFMFRKFLKRLPKEDGRSELDWQDYYIENSRHLWNDE 62 Query: 91 MKAFLDQLVQPVPSPFRDIAKHSIAAEIGKIAVESHAPEVTREHCIRGYIVATPRRDNRF 150 K FLD+L PVP FRD AK IA +IG++A++ ++ ++ I+GYI+ATP+RD+ F Sbjct: 63 NKQFLDELTAPVPELFRDAAKAKIAGKIGELALKEKVAKIDQQLMIKGYILATPKRDHTF 122 Query: 151 LISFLEKNGIDYSLYQHLIK 170 L L ID YQ L+K Sbjct: 123 LKRHLRDKKIDLEPYQTLLK 142 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.140 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 258,599,497 Number of extensions: 10092496 Number of successful extensions: 30551 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 30551 Number of HSP's successfully gapped: 8 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 121 (51.2 bits)