BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0042.p
         (1259 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_149323.1| Secreted protein containing cell-adhesion domai...    64   2e-08

>ref|NP_149323.1| Secreted protein containing cell-adhesion domains [Clostridium
           acetobutylicum]
 sp|P33747|Y5G0_CLOAB Hypothetical protein CAP0160 precursor
 gb|AAK76905.1| Secreted protein containing cell-adhesion domains [Clostridium
           acetobutylicum]
          Length = 967

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 78/321 (24%), Positives = 142/321 (44%), Gaps = 63/321 (19%)

Query: 363 FDNSMGIIG-DSGLWRSSVYPSFPYSGVYVATFQGRDNPKNDDRFDVYRKWSRDNLSSMT 421
            DN +GI    +G W ++    F   G Y   ++ +DN                 + + T
Sbjct: 609 LDNDLGISDFANGQWVNNEINEFKKPGKYTIAYKFKDNA----------------IVNET 652

Query: 422 FHVHRKPIALFSA-----KLMGGW---LQITDSSYDLDHITAS--NKGLMDWQWQYKK-T 470
            +V+RKP  +F+A      + G +   ++  D SYD+DH  +    KG+++ ++Q+K+ T
Sbjct: 653 VNVNRKPTPIFTAYTAQDAVSGKYDVVIKDEDKSYDIDHENSDGDRKGIVNSKFQWKEVT 712

Query: 471 EG--QVWTDGFPPAQLPGNDQYDIRLRVRDVDGENGAGVWSD-WSQQTVGAAYNLPPVAL 527
           +G    W DG  P+    N  + ++L V+D++G+     WS+   +       N+ P A 
Sbjct: 713 QGVNDTWHDGKLPSGQDSNKDFIVKLEVQDLEGQ-----WSNPLVKYITTRNSNVAPHAQ 767

Query: 528 FTVEPSIV---------SYRKATTIIDKSFDPDNDPLDVYNWTVIKDGWQQVWSHWGGAT 578
           FT     +         S        D+S+D + D +  + W V  +    ++     +T
Sbjct: 768 FTESAEEMPVDQLNNDASVGMDAIFTDESYDANGDSIREH-WIVTDNNGNTIYD----ST 822

Query: 579 TPPNIAAYG---VGTYQLTLKVHD------NRGLWSEPYSQTVQV--INHPPAAAFSM-- 625
           + P  + +    +GTY +TL   D         L S+ Y+  +++  INH P A F +  
Sbjct: 823 SMPKASVFVGKPLGTYNVTLTCDDGPTPKVGAMLTSDSYTLQLKLVPINHKPVAKFEVDN 882

Query: 626 PTEVYRDTVITMENMTPDPDE 646
            ++V  D  IT ++  PD D+
Sbjct: 883 TSKVPADIKITEDSTDPDGDK 903


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.315    0.133    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 2,092,823,208
Number of extensions: 96773538
Number of successful extensions: 154326
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 154331
Number of HSP's successfully gapped: 3
Length of query: 1259
Length of database: 757,237,578
Length adjustment: 137
Effective length of query: 1122
Effective length of database: 385,269,015
Effective search space: 432271834830
Effective search space used: 432271834830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 132 (55.5 bits)