BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0307.0038.p
         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_711153.1| conserved hypothetical protein [Leptospira inte...    93   2e-18
ref|ZP_00079345.1| COG3123: Uncharacterized protein conserved in...    91   1e-17
ref|NP_952381.1| conserved hypothetical protein [Geobacter sulfu...    90   1e-17
ref|NP_906427.1| conserved hypothetical protein [Wolinella succi...    89   4e-17
gb|EAJ44991.1| unknown [environmental sequence]                        84   7e-16

>ref|NP_711153.1| conserved hypothetical protein [Leptospira interrogans serovar lai
           str. 56601]
 gb|AAN48171.1| conserved hypothetical protein [Leptospira interrogans serovar lai
           str. 56601]
 gb|AAS71240.1| conserved hypothetical protein [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 106

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 51/68 (75%)

Query: 2   TLGIMLPGVYEFGTEGPETMEILSGELKVLLPGTDVWKEIKGTDTFHVPGNSKFALEVFA 61
           TLGI++PG Y+FGT+  E MEIL GEL V LPG +VW EIKG  +F VP  S+F ++V  
Sbjct: 35  TLGILMPGQYDFGTDEKEIMEILDGELLVKLPGQEVWSEIKGGQSFEVPAKSRFQMDVKK 94

Query: 62  LTDYCCSY 69
           ++DYCCSY
Sbjct: 95  ISDYCCSY 102


>ref|ZP_00079345.1| COG3123: Uncharacterized protein conserved in bacteria [Geobacter
           metallireducens]
          Length = 114

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 50/68 (73%)

Query: 2   TLGIMLPGVYEFGTEGPETMEILSGELKVLLPGTDVWKEIKGTDTFHVPGNSKFALEVFA 61
           TLGIM PG Y F T  PE MEIL+GEL + LPG+D+W  I G ++F VP NS F ++V +
Sbjct: 45  TLGIMQPGEYTFNTGAPEIMEILTGELDLKLPGSDLWDRIGGGESFEVPANSSFTMKVLS 104

Query: 62  LTDYCCSY 69
           LTDYCCS+
Sbjct: 105 LTDYCCSF 112


>ref|NP_952381.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gb|AAR34704.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
          Length = 104

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/68 (58%), Positives = 49/68 (72%)

Query: 2   TLGIMLPGVYEFGTEGPETMEILSGELKVLLPGTDVWKEIKGTDTFHVPGNSKFALEVFA 61
           TLGIM PG Y F T  PE MEILSGEL + LPG+D W  + G ++F VP NS F ++V +
Sbjct: 35  TLGIMQPGEYTFTTGAPEIMEILSGELDLKLPGSDAWNRVGGGESFDVPANSSFTMKVLS 94

Query: 62  LTDYCCSY 69
           LTDYCCS+
Sbjct: 95  LTDYCCSF 102


>ref|NP_906427.1| conserved hypothetical protein [Wolinella succinogenes]
 emb|CAE09327.1| conserved hypothetical protein [Wolinella succinogenes]
          Length = 105

 Score = 89.0 bits (219), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 50/68 (73%)

Query: 2   TLGIMLPGVYEFGTEGPETMEILSGELKVLLPGTDVWKEIKGTDTFHVPGNSKFALEVFA 61
           TLGIMLPG YEFGT+  E MEIL GEL+V LP    W+ ++G ++F VP +S+F+L+V  
Sbjct: 36  TLGIMLPGSYEFGTDKAEIMEILEGELEVFLPQESKWRTLRGGESFDVPAHSRFSLKVNE 95

Query: 62  LTDYCCSY 69
             DYCCSY
Sbjct: 96  TVDYCCSY 103


>gb|EAJ44991.1| unknown [environmental sequence]
          Length = 98

 Score = 84.3 bits (207), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 47/68 (69%)

Query: 2  TLGIMLPGVYEFGTEGPETMEILSGELKVLLPGTDVWKEIKGTDTFHVPGNSKFALEVFA 61
          TLG+ML G YEF TE  E MEI++G+L+VLLP    W  IK  +TF VP NS F L++  
Sbjct: 28 TLGVMLKGEYEFNTEQKEIMEIMTGKLQVLLPNKSEWINIKSGETFEVPKNSSFKLKIHD 87

Query: 62 LTDYCCSY 69
          LT+YCC Y
Sbjct: 88 LTNYCCEY 95


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 118,727,069
Number of extensions: 4124075
Number of successful extensions: 9815
Number of sequences better than 1.0e-05: 40
Number of HSP's gapped: 9815
Number of HSP's successfully gapped: 40
Length of query: 72
Length of database: 757,237,578
Length adjustment: 43
Effective length of query: 29
Effective length of database: 640,488,321
Effective search space: 18574161309
Effective search space used: 18574161309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)