BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0031.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391431.1| alternate gene name: yvhK~similar to hypothetic... 218 6e-56 ref|NP_834863.1| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579... 217 1e-55 ref|NP_981597.1| conserved hypothetical protein TIGR00257 [Bacil... 214 8e-55 ref|NP_244497.1| BH3630~unknown conserved protein [Bacillus halo... 213 3e-54 ref|NP_847599.1| conserved hypothetical protein TIGR00257 [Bacil... 213 3e-54 >ref|NP_391431.1| alternate gene name: yvhK~similar to hypothetical proteins [Bacillus subtilis] sp|P32437|YVYE_BACSU Hypothetical protein yvyE pir||A70049 conserved hypothetical protein yvyE - Bacillus subtilis gb|AAC44936.1| Ycr59c/YigZ homolog emb|CAB15568.1| yvyE [Bacillus subtilis subsp. subtilis str. 168] Length = 217 Score = 218 bits (555), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 134/205 (65%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML Y TV+ G E+VI KSRFI H+ V TE+EA +FI+ IKKQHWNATHNCSAY+IG Sbjct: 1 MLHSYFTVKEAGEHEIVIEKSRFICHLSRVSTEQEAQEFIQKIKKQHWNATHNCSAYVIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E D IQ+ +DDGEPSGTAG P+LEV++ + +K+ VVTRYFGGI LGAGGLIRAY Sbjct: 61 ENDHIQKANDDGEPSGTAGVPMLEVLKKRRLKDTCAVVTRYFGGIKLGAGGLIRAYGKSV 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 L V+ R L R + DYTWLGK+ENELR E +++ V E Sbjct: 121 SEGLNHIGVVERKLMRIMHTSADYTWLGKIENELRESQFLLKEIHYSENVEFETYVEEKE 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 +AF W+T+LT G++ + EG Y Sbjct: 181 TNAFSEWMTELTNGKSDIKEGELTY 205 >ref|NP_834863.1| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579] gb|AAP12064.1| Xaa-Pro dipeptidase [Bacillus cereus ATCC 14579] Length = 211 Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 108/205 (52%), Positives = 137/205 (66%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML QY T++ G E+VI+KSRFI ++ TEEEA +FI+ IKKQHWNATHNCSAY+IG Sbjct: 1 MLLQYLTIKDYGEHEIVIQKSRFICYISRATTEEEAQEFIQKIKKQHWNATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E+D IQ+ +DDGEPSGTAG P+LEV++ + +K+ +VVTRYFGGI LGAGGLIRAY Sbjct: 61 EQDHIQKANDDGEPSGTAGVPMLEVLKKRGLKDTVVVVTRYFGGIKLGAGGLIRAYGKCT 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 + V+ R L R + EIDYT LGKVENELR + + + VT D Sbjct: 121 SEGINHVGVVQRKLMRVMQTEIDYTLLGKVENELRNSKYAIKDIHYLENVTFDTYVEEDG 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 AF W+ +LT G+ +TEG LY Sbjct: 181 KQAFTDWMIELTNGKCTITEGDMLY 205 >ref|NP_981597.1| conserved hypothetical protein TIGR00257 [Bacillus cereus ATCC 10987] gb|AAS44205.1| conserved hypothetical protein TIGR00257 [Bacillus cereus ATCC 10987] Length = 211 Score = 214 bits (546), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 107/205 (52%), Positives = 139/205 (67%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML QY T+++ G E+VI+KSRFI +V TEEEA +FI+ IKKQ+WNATHNCSAY+IG Sbjct: 1 MLLQYLTIKNYGEHEIVIQKSRFICYVSRATTEEEAQEFIQKIKKQNWNATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E+D+IQ+ +DDGEPSGTAG P+LEV++ + +K+ +VVTRYFGGI LGAGGLIRAY Sbjct: 61 EQDQIQKANDDGEPSGTAGVPMLEVLKKRGLKDTVVVVTRYFGGIKLGAGGLIRAYGKCT 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 + V+ R L R + EIDYT LGK+ENELR + + + VT D Sbjct: 121 SEGINHVGVVERKLMRIMQTEIDYTLLGKIENELRNSKYAIKDIHYLENVTFDTYVEEDG 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 AF W+ +LT G+ +TEG LY Sbjct: 181 KQAFTDWMIELTNGKCTITEGDMLY 205 >ref|NP_244497.1| BH3630~unknown conserved protein [Bacillus halodurans] pir||F84103 hypothetical protein BH3630 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07349.1| BH3630~unknown conserved protein [Bacillus halodurans] Length = 213 Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 105/208 (50%), Positives = 135/208 (64%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML Y TV+ G E+ I+KSRFI H+ +EEEA+QFIE IKK+HWNATHNCSAY+IG Sbjct: 1 MLASYYTVKESGIHEISIQKSRFIAHLSRATSEEEAIQFIEQIKKEHWNATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E D++Q+ +DDGEPSGTAG P+LEV++ + +K+ VVTRYFGG+ LGAGGLIRAY Sbjct: 61 ENDQVQKANDDGEPSGTAGVPMLEVLKKRRLKDTVAVVTRYFGGVKLGAGGLIRAYGSAV 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 L A V+ R + + IDY WLGKVENELR E + + V + E Sbjct: 121 SDGLNAIGVVERKRMQVIHTSIDYHWLGKVENELRQSHYLLKEISYLENVDVQTYVLEAE 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLYYSE 209 +++ W+T+LT GQA T G Y E Sbjct: 181 VESYCEWMTNLTNGQAAFTHGAIEYLEE 208 >ref|NP_847599.1| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. Ames] gb|AAP29085.1| conserved hypothetical protein TIGR00257 [Bacillus anthracis str. Ames] Length = 211 Score = 213 bits (541), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/205 (51%), Positives = 137/205 (66%) Query: 2 MLEQYRTVRSPGSREVVIRKSRFIGHVMPVETEEEAVQFIENIKKQHWNATHNCSAYMIG 61 ML QY T++ G E+VI+KSRFI +V TEEEA +FI+ IKKQ+WNATHNCSAY+IG Sbjct: 1 MLLQYLTIKGYGEHEIVIQKSRFICYVSRATTEEEAQEFIQKIKKQNWNATHNCSAYLIG 60 Query: 62 ERDEIQRQSDDGEPSGTAGKPILEVIRSQNVKNVAIVVTRYFGGIMLGAGGLIRAYTDGA 121 E+D+IQ+ +DDGEPSGTAG P+LEV++ + +K+ +VVTRYFGGI LGAGGLIRAY Sbjct: 61 EQDQIQKANDDGEPSGTAGVPMLEVLKKRGLKDTVVVVTRYFGGIKLGAGGLIRAYGKCT 120 Query: 122 VLALEAGEVITRVLRREVFVEIDYTWLGKVENELRGRGIQTGETLFTDKVTLLCLPRNDE 181 + V+ R L R + EIDYT LGK+ENELR + + + VT D Sbjct: 121 SEGINHVGVVERKLMRVMQTEIDYTLLGKIENELRNSKYAIKDIHYLENVTFDTYVEEDG 180 Query: 182 GDAFMAWITDLTQGQALVTEGRRLY 206 F W+ +LT G+ +TEG LY Sbjct: 181 KQTFTDWMIELTNGKCTITEGDMLY 205 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 311,545,544 Number of extensions: 12574957 Number of successful extensions: 30388 Number of sequences better than 1.0e-05: 149 Number of HSP's gapped: 30284 Number of HSP's successfully gapped: 149 Length of query: 211 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 91 Effective length of database: 431,425,698 Effective search space: 39259738518 Effective search space used: 39259738518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)