BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0307.0018.p (341 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_654243.1| ABC_tran, ABC transporter [Bacillus anthracis A... 379 e-104 ref|NP_830185.1| ABC transporter ATP-binding protein [Bacillus c... 378 e-103 ref|NP_976669.1| ABC transporter, ATP-binding protein [Bacillus ... 377 e-103 ref|NP_645233.1| ORFID:MW0416~hypothetical protein, similar to A... 355 6e-97 ref|NP_370986.1| hypothetical protein [Staphylococcus aureus sub... 353 3e-96 >ref|NP_654243.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_842861.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAP24347.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] Length = 339 Score = 379 bits (973), Expect = e-104, Method: Compositional matrix adjust. Identities = 181/341 (53%), Positives = 257/341 (75%), Gaps = 5/341 (1%) Query: 1 MIEIKNVYKTFERKGQSIEALRGVSLSIARGDIYGVIGYSGAGKSTLIRLVNALERPTAG 60 MI NV K +E GQS+ A+ V+LS+ +G+I+G+IG+SGAGKSTL+RLVN LERPTAG Sbjct: 1 MISFNNVSKVYESGGQSVHAVEDVTLSVEKGEIFGIIGFSGAGKSTLLRLVNMLERPTAG 60 Query: 61 EVLVEGQDLAGYNPAELRQAKKNIGMIFQHFNLLESKTVFDNIAIPLVLLKRSKQEIRER 120 + ++ +D+ + ELR+ ++ IGMIFQ FNL S+TVF NIA PL L K K EI+ER Sbjct: 61 TISIDDKDITSLSTKELRKLRQRIGMIFQSFNLFNSRTVFGNIAYPLKLAKVPKNEIKER 120 Query: 121 VTELLKFTGLGDKANSYPKELSGGQKQRVGIARALASNPSILLCDEATSALDPQTTKSIL 180 V ELLKF GL DKAN+YP++LSGGQKQRVGIARALA++P IL+CDEATSALDP+TT IL Sbjct: 121 VNELLKFVGLEDKANNYPEQLSGGQKQRVGIARALATSPDILICDEATSALDPETTTEIL 180 Query: 181 ELLQKINEEYNITIMIITHEMAVIQQICNKVAVMERGEIIEQGNVLDVFGSPHHPTTQSF 240 LL+K+N EYN+TI++ITHEM V+++IC++VAVME+G++IE+G + DVF P TTQ+F Sbjct: 181 NLLKKVNREYNLTILLITHEMHVVKEICHRVAVMEKGKVIEEGKLFDVFTQPKTTTTQNF 240 Query: 241 VQTVIHNSVPQSVLHTLKAENGRRLFKLKFXXXXGAAWEPIINSLIRRYEVDVNILFANM 300 V++VI++ +P+SVL K +NG ++++L F +P+++ + + Y VDVN+L+ N+ Sbjct: 241 VRSVINDHLPESVLA--KIQNGGQIYRLTFTGE--ETGQPVLSYIAKNYNVDVNVLYGNI 296 Query: 301 TEIQNTTLGNMILQMHGDHAVIDRAADFITSQGVEITEVEA 341 E+QN GN+++++ G+ I +A + Q V++ EVEA Sbjct: 297 IELQNVLFGNLLVELQGEQREIQKALQHLRLQ-VQLKEVEA 336 >ref|NP_830185.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] gb|AAP07386.1| ABC transporter ATP-binding protein [Bacillus cereus ATCC 14579] Length = 339 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 181/341 (53%), Positives = 256/341 (75%), Gaps = 5/341 (1%) Query: 1 MIEIKNVYKTFERKGQSIEALRGVSLSIARGDIYGVIGYSGAGKSTLIRLVNALERPTAG 60 MI NV K +E GQS+ A+ V+LS+ +G+I+G+IG+SGAGKSTL+RLVN LERPTAG Sbjct: 1 MISFNNVSKLYESAGQSVHAVEDVTLSVEKGEIFGIIGFSGAGKSTLLRLVNMLERPTAG 60 Query: 61 EVLVEGQDLAGYNPAELRQAKKNIGMIFQHFNLLESKTVFDNIAIPLVLLKRSKQEIRER 120 + ++ +D+ + ELR+ ++ IGMIFQ FNL S+TVF NIA PL L K K EI+ER Sbjct: 61 TISIDDKDITSLSTKELRKLRQRIGMIFQSFNLFNSRTVFGNIAYPLKLAKVPKNEIKER 120 Query: 121 VTELLKFTGLGDKANSYPKELSGGQKQRVGIARALASNPSILLCDEATSALDPQTTKSIL 180 V ELLKF GL DKAN YP++LSGGQKQRVGIARALA++P IL+CDEATSALDP+TT IL Sbjct: 121 VNELLKFVGLEDKANYYPEQLSGGQKQRVGIARALATSPDILICDEATSALDPETTTEIL 180 Query: 181 ELLQKINEEYNITIMIITHEMAVIQQICNKVAVMERGEIIEQGNVLDVFGSPHHPTTQSF 240 LL+K+N EYN+TI++ITHEM V+++IC++VAVME+G++IE+G + DVF P TTQ+F Sbjct: 181 NLLKKVNREYNLTILLITHEMHVVKEICHRVAVMEKGKVIEEGKLFDVFTQPKTKTTQNF 240 Query: 241 VQTVIHNSVPQSVLHTLKAENGRRLFKLKFXXXXGAAWEPIINSLIRRYEVDVNILFANM 300 V++VI++ +P+SVL K +NG ++++L F +P+++ + + Y VDVN+L+ N+ Sbjct: 241 VRSVINDHLPESVLA--KIQNGGQIYRLTFTGE--ETGQPVLSYIAKNYNVDVNVLYGNI 296 Query: 301 TEIQNTTLGNMILQMHGDHAVIDRAADFITSQGVEITEVEA 341 E+QN GN+++++ G+ I +A + Q V++ EVEA Sbjct: 297 IELQNVLFGNLLVELQGEQREIQKALQHLRLQ-VQLKEVEA 336 >ref|NP_976669.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAS39277.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 339 Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/341 (52%), Positives = 257/341 (75%), Gaps = 5/341 (1%) Query: 1 MIEIKNVYKTFERKGQSIEALRGVSLSIARGDIYGVIGYSGAGKSTLIRLVNALERPTAG 60 MI NV K +E GQS+ A+ V+LS+ +G+I+G+IG+SGAGKSTL+RLVN LERPTAG Sbjct: 1 MISFNNVSKVYETGGQSVHAVEDVTLSVEKGEIFGIIGFSGAGKSTLLRLVNMLERPTAG 60 Query: 61 EVLVEGQDLAGYNPAELRQAKKNIGMIFQHFNLLESKTVFDNIAIPLVLLKRSKQEIRER 120 + ++ +++ + ELR+ ++ IGMIFQ FNL S+TVF NIA PL L K K EI+ER Sbjct: 61 TISIDDKEITSLSTKELRKLRQRIGMIFQSFNLFNSRTVFGNIAYPLKLAKVPKNEIKER 120 Query: 121 VTELLKFTGLGDKANSYPKELSGGQKQRVGIARALASNPSILLCDEATSALDPQTTKSIL 180 V ELLKF GL DKAN+YP++LSGGQKQRVGIARALA++P IL+CDEATSALDP+TT IL Sbjct: 121 VNELLKFVGLEDKANNYPEQLSGGQKQRVGIARALATSPDILICDEATSALDPETTTEIL 180 Query: 181 ELLQKINEEYNITIMIITHEMAVIQQICNKVAVMERGEIIEQGNVLDVFGSPHHPTTQSF 240 LL+K+N EYN+TI++ITHEM V+++IC++VAVME+G++IE+G + DVF P TTQ+F Sbjct: 181 NLLKKVNREYNLTILLITHEMHVVKEICHRVAVMEKGKVIEEGKLFDVFTQPKTKTTQNF 240 Query: 241 VQTVIHNSVPQSVLHTLKAENGRRLFKLKFXXXXGAAWEPIINSLIRRYEVDVNILFANM 300 V++VI++ +P+SVL K +NG ++++L F +P+++ + + Y VDVN+L+ N+ Sbjct: 241 VRSVINDHLPESVLA--KIQNGGQIYRLTFTGE--ETGQPVLSYIAKNYNVDVNVLYGNI 296 Query: 301 TEIQNTTLGNMILQMHGDHAVIDRAADFITSQGVEITEVEA 341 E+QN GN+++++ G+ I +A + Q V++ EVEA Sbjct: 297 IELQNVLFGNLLVELQGEQREIQKALQHLRLQ-VQLKEVEA 336 >ref|NP_645233.1| ORFID:MW0416~hypothetical protein, similar to ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAB94281.1| MW0416 [Staphylococcus aureus subsp. aureus MW2] Length = 341 Score = 355 bits (912), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 177/340 (52%), Positives = 234/340 (68%), Gaps = 1/340 (0%) Query: 1 MIEIKNVYKTFERKGQSIEALRGVSLSIARGDIYGVIGYSGAGKSTLIRLVNALERPTAG 60 MIE + V KTF +K Q I+AL+ VS ++ R DI+GVIGYSGAGKSTL+RLVN LE + G Sbjct: 1 MIEFRQVSKTFNKKKQKIDALKDVSFTVNRNDIFGVIGYSGAGKSTLVRLVNHLEAASNG 60 Query: 61 EVLVEGQDLAGYNPAELRQAKKNIGMIFQHFNLLESKTVFDNIAIPLVLLKRSKQEIRER 120 +V+V+G D+ Y+ +R KK+IGMIFQHFNLL S TVF N+A+PL+L K+SK EI++R Sbjct: 61 QVIVDGHDITNYSDKMMRDIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQR 120 Query: 121 VTELLKFTGLGDKANSYPKELSGGQKQRVGIARALASNPSILLCDEATSALDPQTTKSIL 180 VTE+L+F GL DK + +P+ELSGGQKQRV IARAL +NP ILLCDEATSALDP TT SIL Sbjct: 121 VTEMLEFVGLSDKKDQFPEELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180 Query: 181 ELLQKINEEYNITIMIITHEMAVIQQICNKVAVMERGEIIEQGNVLDVFGSPHHPTTQSF 240 LL+ +N+ + ITIM+ITHEM VI+ ICN+VAVME+G+++E G V +VF P Q+F Sbjct: 181 TLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240 Query: 241 VQTVIHNSVPQSVLHTLKAENGRRLFKLKFXXXXGAAWEPIINSLIRRYEVDVNILFANM 300 V TVI S++ L E K +PIIN LI+ +V ILF++M Sbjct: 241 VSTVIQTEPSTSLIRRLNDEQVGDFKDYKIFVEETQVTQPIINDLIQICGREVKILFSSM 300 Query: 301 TEIQNTTLGNMILQMHGDHAVIDRAAD-FITSQGVEITEV 339 +EIQ T+ M L+ + D D A + + + ++ EV Sbjct: 301 SEIQGNTVCYMWLRFNMDQQFDDTAINQYFKEKNIQFEEV 340 >ref|NP_370986.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373672.1| hypothetical protein, similar to ABC transporter ATP-binding protein [Staphylococcus aureus subsp. aureus N315] pir||G89811 hypothetical protein SA0420 [imported] - Staphylococcus aureus (strain N315) dbj|BAB41650.1| SA0420 [Staphylococcus aureus subsp. aureus N315] dbj|BAB56624.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] Length = 341 Score = 353 bits (906), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 176/340 (51%), Positives = 235/340 (69%), Gaps = 1/340 (0%) Query: 1 MIEIKNVYKTFERKGQSIEALRGVSLSIARGDIYGVIGYSGAGKSTLIRLVNALERPTAG 60 MIE + V K+F +K Q+I+AL+ VS ++ R DI+GVIGYSGAGKSTL+RLVN LE + G Sbjct: 1 MIEFRQVSKSFHKKKQTIDALKDVSFTVNRNDIFGVIGYSGAGKSTLVRLVNHLEAASNG 60 Query: 61 EVLVEGQDLAGYNPAELRQAKKNIGMIFQHFNLLESKTVFDNIAIPLVLLKRSKQEIRER 120 +V+V+G D+ Y+ +R+ KK+IGMIFQHFNLL S TVF N+A+PL+L K+SK EI++R Sbjct: 61 QVIVDGHDITNYSEKGMREIKKDIGMIFQHFNLLNSATVFKNVAMPLILSKKSKTEIKQR 120 Query: 121 VTELLKFTGLGDKANSYPKELSGGQKQRVGIARALASNPSILLCDEATSALDPQTTKSIL 180 VTE+L+F GL DK + +P ELSGGQKQRV IARAL +NP ILLCDEATSALDP TT SIL Sbjct: 121 VTEMLEFVGLSDKKDQFPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASIL 180 Query: 181 ELLQKINEEYNITIMIITHEMAVIQQICNKVAVMERGEIIEQGNVLDVFGSPHHPTTQSF 240 LL+ +N+ + ITIM+ITHEM VI+ ICN+VAVME+G+++E G V +VF P Q+F Sbjct: 181 TLLKNVNQTFGITIMMITHEMRVIKDICNRVAVMEKGQVVETGTVKEVFSHPKTTIAQNF 240 Query: 241 VQTVIHNSVPQSVLHTLKAENGRRLFKLKFXXXXGAAWEPIINSLIRRYEVDVNILFANM 300 V TVI S++ L E K +PIIN LI+ +V ILF++M Sbjct: 241 VSTVIQTEPSTSLIRRLNDEQVGGFKDYKIFVEETQVTQPIINDLIQICGREVKILFSSM 300 Query: 301 TEIQNTTLGNMILQMHGDHAVIDRAAD-FITSQGVEITEV 339 +EIQ T+ M L+ + D D A + + + ++ EV Sbjct: 301 SEIQGNTVCYMWLRFNIDQQFDDTAINQYFKEKNIQFEEV 340 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 452,645,628 Number of extensions: 17582987 Number of successful extensions: 125654 Number of sequences better than 1.0e-05: 23060 Number of HSP's gapped: 98617 Number of HSP's successfully gapped: 24862 Length of query: 341 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 215 Effective length of database: 415,135,104 Effective search space: 89254047360 Effective search space used: 89254047360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)