BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0305.0011.p (765 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAQ91299.1| methyl-accepting chemotaxis protein [Paenibacillu... 171 5e-41 ref|NP_623777.1| Methyl-accepting chemotaxis protein [Thermoanae... 119 2e-25 ref|ZP_00097492.1| COG0840: Methyl-accepting chemotaxis protein ... 114 6e-24 ref|NP_845584.1| methyl-accepting chemotaxis protein [Bacillus a... 114 8e-24 ref|NP_622128.1| Methyl-accepting chemotaxis protein [Thermoanae... 112 3e-23 >gb|AAQ91299.1| methyl-accepting chemotaxis protein [Paenibacillus sp. Dex50-2] Length = 610 Score = 171 bits (434), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 134/503 (26%), Positives = 237/503 (47%), Gaps = 8/503 (1%) Query: 263 KNFAMVRSLKNLGANS--GYVIMLELKNSLLEEAFESVTLGDGSRIQLVSPDGTVVASSN 320 K FA R LK L N G+ ++LE+K +++ + L D + S DG V+ + Sbjct: 110 KVFAFGRPLKRLSDNKTVGF-LLLEVKADAIKQTLADLRLDDEGNSYIASADGKVLVA-- 166 Query: 321 PEEDGKASELGF-IKESKINNKSQDAKDANGEDVLAVYSPMVKADWKLAGIVPTGELVKA 379 EE ++L F +KE++ N Q+ NG + + A W++ + P +L++ Sbjct: 167 EEESLLGTKLSFGLKENEQENSWQEV--INGNKFIVTRAASAIAGWQVVSVYPVDKLLED 224 Query: 380 ATPXXXXXXXXXXXXXXXXXXVGFVMVRMIARPLARLKDLMVEGAKGDLSVRTEYVSKDE 439 + + R P+ +L+ +M G GDL+VR + KDE Sbjct: 225 MRQIRSEVIFIALVCSAIIIVLAYFSARRFTHPIEKLRMMMSHGEAGDLTVRADLAGKDE 284 Query: 440 IGELSASFNTMMERITELVAQTTDTAREVLETAGELGDASRXXXXXXXXXXXXXXXXXXX 499 + L SFN M+ +I + QT + A EVL T+ L ++S Sbjct: 285 LAALGGSFNQMIGKIRKQFIQTFEAADEVLGTSTHLSESSGKMSKYAKEIANATESIAKG 344 Query: 500 XXXLAQEAERGNELTDLIGTQMQSVIAANAEMDEAARGVGEASGQGAKQLEELLTQTSRT 559 A E+GN L + + ++ + ++ E + E S QG + + ++ + T Sbjct: 345 AEQQATALEKGNGLVLEMTSNVKQMTEDVQDLIEVSNQAQERSVQGTQHMTLMIGKNRDT 404 Query: 560 GEMTTALVDRVNNLKETVSSVIKVLDVMKNITQQTNILSLNATIXXXXXXXXXXXFMVVA 619 ++ + V+ L + + + +L++++NI++QTNILSLNATI FMV+A Sbjct: 405 AQIMKEISSHVSKLFDRLGEIDSILELIRNISKQTNILSLNATIEANRAGNAGKGFMVIA 464 Query: 620 DEVRQLADQSKQSIAVVAGITDKIITEMNETVAVLSEVAPLFKQQMNSVKSTSEIFVSVQ 679 EVR LA QS S+ + D I +M+ T L + P+ ++Q++SV+ + IF VQ Sbjct: 465 SEVRALAMQSGDSVTRIVQTLDNIRKDMDATKVALLKSGPIMEEQIHSVEQANLIFNQVQ 524 Query: 680 GQMDDFISSLESVTGAIDSLNHSQGVLSDAMSNXXXXXXXXXXTSEEVASLSNEQQNVSD 739 MD+ L + T ++ ++ SQ + + +S+ S++VAS + +QQ +++ Sbjct: 525 EGMDEANKRLSTFTMTMERMDQSQQQIMEFISDAAAVAEQSMAMSQQVASSAADQQQLTE 584 Query: 740 QLVALSGKLEGASTQLKDKLSLF 762 Q V S +LE S +L+ L+ F Sbjct: 585 QFVRWSVQLEQVSERLRVSLNHF 607 >ref|NP_623777.1| Methyl-accepting chemotaxis protein [Thermoanaerobacter tengcongensis] gb|AAM25381.1| Methyl-accepting chemotaxis protein [Thermoanaerobacter tengcongensis] Length = 689 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 129/553 (23%), Positives = 239/553 (43%), Gaps = 31/553 (5%) Query: 223 DQEWYKTAVANAEN-------YQSYYSKEAKSAQNYWFPTAVAGDNGKNFAMVRSLKNLG 275 ++ WYK AV NA+ YQ + SK P A+ S NL Sbjct: 158 ERPWYKDAV-NAKGEPVWTKPYQDFVSK---------IPEITIAK-----AVFDSSGNLK 202 Query: 276 ANSGYVIMLELKNSLLEEAFESVTLGDGSRIQLVSPDGTVVASSNPEEDGKASEL---GF 332 G I LE L + S+ +G + +++ DGTV+ +P++D + + F Sbjct: 203 GVVGIDITLEQ----LSKNIASINIGKTGYLYILTKDGTVIV--HPKKDMLFTSIYKYDF 256 Query: 333 IKESKINNKSQDAKDANGEDVLAVYSPMVKADWKLAGIVPTGELVKAATPXXXXXXXXXX 392 K+ + S NG A + WK A + ELV+ Sbjct: 257 GKKIIETDNSTVYYTFNGAYKFASVRNLEAFGWKAAVAMENEELVRDMNKITNFIITVSI 316 Query: 393 XXXXXXXXVGFVMVRMIARPLARLKDLMVEGAKGDLSVRTEYVSKDEIGELSASFNTMME 452 + + I+ + ++ M E ++G+++VR + +KDE+G L+ SFNTM+E Sbjct: 317 VILLIGIVIAYFFSNSISLGIKKVVAAMEEASQGNITVRADVKTKDEVGVLANSFNTMLE 376 Query: 453 RITELVAQTTDTAREVLETAGELGDASRXXXXXXXXXXXXXXXXXXXXXXLAQEAERGNE 512 I +L+ + V +A L AS A+EAE Sbjct: 377 GIKKLIFDIKSVSESVNHSAENLAVASEQAAQATQDVAKAIEEIAQGASSQAKEAEESAN 436 Query: 513 LTDLIGTQMQSVIAANAEMDEAARGVGEASGQGAKQLEELLTQTSRTGEMTTALVDRVNN 572 T ++G + S + E++ V S +G ++EL+ +T T + + + N Sbjct: 437 ATVVLGQLIDSSLKNAEEINHEVENVNMVSNEGLVTIKELIEKTKHTIQANNNVKEATNY 496 Query: 573 LKETVSSVIKVLDVMKNITQQTNILSLNATIXXXXXXXXXXXFMVVADEVRQLADQSKQS 632 L E + + K+++ + NI QTN+LSLNA I F VVADEVR+LA+QS Q+ Sbjct: 497 LLEKSAEIEKIVETITNIADQTNLLSLNAAIEAARAGEAGRGFAVVADEVRKLAEQSSQA 556 Query: 633 IAVVAGITDKIITEMNETVAVLSEVAPLFKQQMNSVKSTSEIFVSVQGQMDDFISSLESV 692 +A + +I + +N T + + ++Q V +T ++F + + + +E++ Sbjct: 557 ARNIANLIAEIQSTINNTHRTVEDSTKSIEEQSEVVNTTKDVFEGILNAVKFIVEKIENL 616 Query: 693 TGAIDSLNHSQGVLSDAMSNXXXXXXXXXXTSEEVASLSNEQQNVSDQLVALSGKLEGAS 752 T ++ + + + D++ N ++EEV++ S EQ + +++ + + +L+ + Sbjct: 617 TKSLREIEEHKNRIVDSIQNIAAVSEEAAASAEEVSATSEEQSAIVEEMASTANELKSYA 676 Query: 753 TQLKDKLSLFTIK 765 L + + F ++ Sbjct: 677 NTLIEAIKQFKVE 689 >ref|ZP_00097492.1| COG0840: Methyl-accepting chemotaxis protein [Desulfitobacterium hafniense] Length = 660 Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 106/440 (24%), Positives = 181/440 (41%), Gaps = 15/440 (3%) Query: 298 VTLGDGSRIQLVSPDGTVVASSNPEEDGK---ASELGFIKESKINNKSQDAKDANGEDVL 354 + L D S + PD ++ P E+ K A E G + + GE+ Sbjct: 200 IFLLDQSGKIMTHPDPALIGEEIPVEELKKAVAQEQGIVDYTY-----------GGEEQF 248 Query: 355 AVYSPMVKADWKLAGIVPTGELVKAATPXXXXXXXXXXXXXXXXXXVGFVMVRMIARPLA 414 +V + K WK G++ E+ KA + G + R + L Sbjct: 249 SVIAAYPKTQWKFVGVLGYNEINKAVSQILRNTLTYCVIFAALAIVFGILATRGFTKALK 308 Query: 415 RLKDLMVEGAKGDLSVRTEYVSKDEIGELSASFNTMMERITELVAQTTDTAREVLETAGE 474 L + GD +VR +S+DE G L+ + N M+ ++ L+ A E+ +A + Sbjct: 309 ALFAYSEKIGSGDFTVRARALSRDETGALTNTLNQMVIQLAGLIGNIKHVAEEMNTSAEK 368 Query: 475 LGDASRXXXXXXXXXXXXXXXXXXXXXXLAQEAERGNELTDLIGTQMQSVIAANAEMDEA 534 L ++ A +AE+G + + T++Q++ A + EM + Sbjct: 369 LAASAEETMASSEEINATAAQIAGGASDQAAQAEKGTRMVTELATKIQTLGANSVEMVNS 428 Query: 535 ARGVGEASGQGAKQLEELLTQTSRTGEMTTALVDRVNNLKETVSSVIKVLDVMKNITQQT 594 + +A+ +G + +E L +T + + + + NL ++ +L + NI +QT Sbjct: 429 SMDAKQANERGLQSVEHLRVKTEDSSLAVDQISEVIRNLDGKSQAIGSILAAITNIAEQT 488 Query: 595 NILSLNATIXXXXXXXXXXXFMVVADEVRQLADQSKQSIAVVAGITDKIITEMNETVAVL 654 N+L+LNA+I F VVADE+R+LA+QS QS+ + GI + I E V V+ Sbjct: 489 NLLALNASIEAARAGEAGRGFSVVADEIRKLAEQSAQSVQGIEGIVEDIQRESYHAVGVM 548 Query: 655 SEVAPLFKQQMNSVKSTSEIFVSVQGQMDDFISSLESVTGAIDSLNHSQGVLSDAMSNXX 714 EV + + SV S+ F + M + T I + + D + N Sbjct: 549 KEVKNHSQATVQSVADVSQSFAEISQAMAAIREKIAHTTALIQEMTMDSNQVVDVIQNIS 608 Query: 715 XXXXXXXXTSEEVASLSNEQ 734 SEEV S S EQ Sbjct: 609 AVTEETAAASEEV-SASMEQ 627 >ref|NP_845584.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] gb|AAP27070.1| methyl-accepting chemotaxis protein [Bacillus anthracis str. Ames] Length = 650 Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 116/477 (24%), Positives = 205/477 (42%), Gaps = 29/477 (6%) Query: 220 NVRDQEWYKTAV-ANAENYQSYYSKEAKSAQNYWFPTAVAGDNGKNFAMVRSLKNLGANS 278 N + WYK AV AN E S K +K+ N MV ++ A+ Sbjct: 123 NPLESSWYKDAVKANGEIIVSSPYK-SKATGN----------------MVIAIAKQNADK 165 Query: 279 GYVIMLELKNSLLEEAFESVTLGDGSRIQLVSPDGTVVASSNPE-----EDGKASELGFI 333 VI ++L + + + + + +G + +VS D T+V + E A EL + Sbjct: 166 SGVIGVDLNINDIVKTSKMIKIGKQGFVSIVSQDKTIVVHPTLKPGEKLEKSLADEL-YK 224 Query: 334 KESKINNKSQDAKDANGEDVLAVYSPMVKADWKLAGIVPTGELVKAATPXXXXXXXXXXX 393 KE + S NGED + K WK+AG++P E+ +A P Sbjct: 225 KEDGVITYS-----LNGEDRNISFKTNKKTGWKIAGVMPIKEIEEATNPIFYKTLTIIGA 279 Query: 394 XXXXXXXVGFVMVRMIARPLARLKDLMVEGAKGDLSVRTEYVSKDEIGELSASFNTMMER 453 V F +++ I PL +L ++GDL+ + SKDE+G+L SFNTM E Sbjct: 280 SLLLGGIVIFFILKSIINPLRQLVISAQRISRGDLTEKINIRSKDELGQLGGSFNTMAES 339 Query: 454 ITELVAQTTDTAREVLETAGELGDASRXXXXXXXXXXXXXXXXXXXXXXLAQEAERGNEL 513 + +++Q +A V ++ EL + E G +L Sbjct: 340 LRNIISQINTSAGHVAASSEELTASVEQASVATEQITKEMEEISNSAEVQNNEVASGAKL 399 Query: 514 TDLIGTQMQSVIAANAEMDEAARGVGEASGQGAKQLEELLTQTSRTGEMTTALVDRVNNL 573 + +Q V +E+ ++ + + +G + +E+ +TQ + + + L Sbjct: 400 IGEVTRNIQCVADNASEVSASSLYTKQKANEGEQLVEQTVTQMQSIHHSVSQSDNVIKLL 459 Query: 574 KETVSSVIKVLDVMKNITQQTNILSLNATIXXXXXXXXXXXFMVVADEVRQLADQSKQSI 633 + + +L+V++NI QTN+L+LNA I F +VADEVR+LA+QS +S Sbjct: 460 DKKSQQIGSILEVIQNIAAQTNLLALNAAIEAARAGEQGRGFAIVADEVRKLAEQSSESS 519 Query: 634 AVVAGITDKIITEMNETVAVLSEVAPLFKQQMNSVKSTSEIFVSVQGQMDDFISSLE 690 + + ++I +++ETV ++EV + + T + F + +D +S + Sbjct: 520 MEIGSLINEIQADVHETVKAMNEVGVEVQSGIQVANDTKQSFYEISKSANDIVSKVH 576 >ref|NP_622128.1| Methyl-accepting chemotaxis protein [Thermoanaerobacter tengcongensis] gb|AAM23732.1| Methyl-accepting chemotaxis protein [Thermoanaerobacter tengcongensis] Length = 659 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 174/364 (47%) Query: 402 GFVMVRMIARPLARLKDLMVEGAKGDLSVRTEYVSKDEIGELSASFNTMMERITELVAQT 461 + I+ + ++ M E ++G+++VR + +KDE+G L+ SFNTM+E I +L+ Sbjct: 296 AYFFSNSISSGIKKVVTAMEEASQGNITVRADVKTKDEVGVLANSFNTMLEGIKKLIFDI 355 Query: 462 TDTAREVLETAGELGDASRXXXXXXXXXXXXXXXXXXXXXXLAQEAERGNELTDLIGTQM 521 + V +A L AS A+EAE T ++G + Sbjct: 356 KSVSESVNHSAENLAVASEQAAQATQDVAKAIEEIAQGASSQAKEAEESANATVVLGQLI 415 Query: 522 QSVIAANAEMDEAARGVGEASGQGAKQLEELLTQTSRTGEMTTALVDRVNNLKETVSSVI 581 S + E++ V S +G ++EL+ +T T + + + N L E + + Sbjct: 416 DSSLKNAEEINHEVENVNMVSNEGLVTIKELIEKTKHTIQANNNVKEATNYLLEKSAEIE 475 Query: 582 KVLDVMKNITQQTNILSLNATIXXXXXXXXXXXFMVVADEVRQLADQSKQSIAVVAGITD 641 K+++ + NI QTN+LSLNA I F VVADEVR+LA+QS Q+ +A + Sbjct: 476 KIVETITNIADQTNLLSLNAAIEAARAGEAGRGFAVVADEVRKLAEQSSQAARNIANLIA 535 Query: 642 KIITEMNETVAVLSEVAPLFKQQMNSVKSTSEIFVSVQGQMDDFISSLESVTGAIDSLNH 701 +I + +N T + + ++Q V +T ++F + + + +E++T ++ + Sbjct: 536 EIQSTINNTHRTVEDSTKSIEEQSEVVNTTKDVFEGILNAVKFIVEKIENLTKSLREIEE 595 Query: 702 SQGVLSDAMSNXXXXXXXXXXTSEEVASLSNEQQNVSDQLVALSGKLEGASTQLKDKLSL 761 + + D++ N ++EEV++ S EQ + +++ + + +L+ + L + + Sbjct: 596 HKNRIVDSIQNIAAVSEEAAASAEEVSATSEEQSAIVEEMASTANELKSYANTLIEAIKQ 655 Query: 762 FTIK 765 F ++ Sbjct: 656 FKVE 659 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.308 0.124 0.319 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 800,274,526 Number of extensions: 26859016 Number of successful extensions: 85778 Number of sequences better than 1.0e-05: 1637 Number of HSP's gapped: 83710 Number of HSP's successfully gapped: 1642 Length of query: 765 Length of database: 757,237,578 Length adjustment: 133 Effective length of query: 632 Effective length of database: 396,129,411 Effective search space: 250353787752 Effective search space used: 250353787752 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 130 (54.7 bits)