BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0303.0001.p (217 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_691817.1| A/G-specific adenine glycosylase [Oceanobacillu... 249 4e-65 ref|NP_241797.1| adenine glycosylase [Bacillus halodurans] >gi|2... 244 1e-63 ref|NP_388743.1| similar to A/G-specific adenine glycosylase [Ba... 243 2e-63 ref|NP_345694.1| A/G-specific adenine glycosylase [Streptococcus... 241 1e-62 ref|NP_358701.1| Similar to A/G-specific adenine glycosylase [St... 241 1e-62 >ref|NP_691817.1| A/G-specific adenine glycosylase [Oceanobacillus iheyensis HTE831] dbj|BAC12852.1| A/G-specific adenine glycosylase [Oceanobacillus iheyensis HTE831] Length = 354 Score = 249 bits (635), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 116/183 (63%), Positives = 140/183 (76%) Query: 18 FSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPTVESLA 77 F LLEWY KRDLPWRR NPY W+SEIMLQQT+VDTVIPYFNRF+E++PTV LA Sbjct: 13 FQTDLLEWYYLNKRDLPWRREPNPYKTWVSEIMLQQTKVDTVIPYFNRFMEKYPTVYDLA 72 Query: 78 DAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYTAGAIL 137 A E++VLK WEGLGYYSRARNLQ A ++V + Y G++PN+ + LKG+GPYT GAIL Sbjct: 73 KADEQDVLKSWEGLGYYSRARNLQTAVREVVDTYNGEIPNNEKELASLKGIGPYTKGAIL 132 Query: 138 SIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFNQALME 197 SIAFN+P PAVDGNV+RV SR IEDDIAK T+ +E+ E+I + S FNQA+M+ Sbjct: 133 SIAFNQPVPAVDGNVLRVFSRILQIEDDIAKQSTKKEIEQYVGEIISHQDPSSFNQAIMD 192 Query: 198 LGA 200 LGA Sbjct: 193 LGA 195 >ref|NP_241797.1| adenine glycosylase [Bacillus halodurans] pir||C83766 adenine glycosylase BH0931 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04650.1| adenine glycosylase [Bacillus halodurans] Length = 372 Score = 244 bits (623), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 116/184 (63%), Positives = 142/184 (77%) Query: 18 FSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFPTVESLA 77 F L+ W+ R+LPWR +++PY +W+SEIMLQQTRVDTVIPY+ F+ +FPT+E+LA Sbjct: 13 FQNDLVTWFSNHYRELPWRENKDPYRVWVSEIMLQQTRVDTVIPYYQAFMRQFPTLETLA 72 Query: 78 DAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPYTAGAIL 137 A E++VLK WEGLGYYSRARNLQ A ++V E YGG+VP+ R + LKGVGPYTAGAIL Sbjct: 73 YAEEDQVLKAWEGLGYYSRARNLQSAVREVVESYGGEVPSTRKEISKLKGVGPYTAGAIL 132 Query: 138 SIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHFNQALME 197 SIA+++PEPAVDGNVMRVLSR IE+DIAK TR E L +LI + S FNQ LME Sbjct: 133 SIAYDQPEPAVDGNVMRVLSRVLYIEEDIAKVKTRTLFESLLYDLISKENPSFFNQGLME 192 Query: 198 LGAL 201 LGAL Sbjct: 193 LGAL 196 >ref|NP_388743.1| similar to A/G-specific adenine glycosylase [Bacillus subtilis] pir||A69802 A/G-specific adenine glycosylase homolog yfhQ - Bacillus subtilis emb|CAB12691.1| yfhQ [Bacillus subtilis subsp. subtilis str. 168] dbj|BAA24483.1| YfhQ [Bacillus subtilis] Length = 369 Score = 243 bits (620), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 119/196 (60%), Positives = 145/196 (73%), Gaps = 5/196 (2%) Query: 6 QQSETQQEAKLFFSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNR 65 +Q + QQ F L+ W++ ++R LPWR ++PY +W+SE+MLQQTRV+TVIPYF R Sbjct: 9 KQKDIQQ-----FRDDLISWFEREQRVLPWREDQDPYKVWVSEVMLQQTRVETVIPYFLR 63 Query: 66 FIERFPTVESLADAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGL 125 F+E+FPTVE+LADA EE+VLK WEGLGYYSR RNLQ A K+VK++YGG VP D GL Sbjct: 64 FVEQFPTVEALADADEEKVLKAWEGLGYYSRVRNLQSAVKEVKQEYGGIVPPDEKDFGGL 123 Query: 126 KGVGPYTAGAILSIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPE 185 KGVGPYT GA+LSIA+N+P PAVDGNVMRV+SR I DDIAK TR E I + Sbjct: 124 KGVGPYTKGAVLSIAYNKPIPAVDGNVMRVMSRILSIWDDIAKPKTRTIFEDAIRAFISK 183 Query: 186 GEASHFNQALMELGAL 201 + S FNQ LMELGAL Sbjct: 184 EKPSEFNQGLMELGAL 199 >ref|NP_345694.1| A/G-specific adenine glycosylase [Streptococcus pneumoniae TIGR4] pir||E95142 A/G-specific adenine glycosylase SP1228 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK75334.1| A/G-specific adenine glycosylase [Streptococcus pneumoniae TIGR4] Length = 381 Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/189 (60%), Positives = 137/189 (72%) Query: 12 QEAKLFFSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFP 71 +E + F LL WY KRDLPWRR +NPY+IW+SEIMLQQTRVDTVIPY+ RF++ FP Sbjct: 4 EEKVISFREKLLAWYDENKRDLPWRRSKNPYHIWVSEIMLQQTRVDTVIPYYERFLDWFP 63 Query: 72 TVESLADAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPY 131 TVESLA APEE +LK WEGLGYYSR RN+Q AA+Q+ +GGQ PN + + LKG+GPY Sbjct: 64 TVESLATAPEESLLKAWEGLGYYSRVRNMQAAAQQIMTDFGGQFPNTYEGISSLKGIGPY 123 Query: 132 TAGAILSIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHF 191 TAGAI SIAFN PEPAVDGNVMRVL+R F + DI R + + LI F Sbjct: 124 TAGAISSIAFNLPEPAVDGNVMRVLARLFEVNHDIGIPSNRKIFQAMMEILINPDRPGDF 183 Query: 192 NQALMELGA 200 NQALM+LG+ Sbjct: 184 NQALMDLGS 192 >ref|NP_358701.1| Similar to A/G-specific adenine glycosylase [Streptococcus pneumoniae R6] pir||C98010 A/G-specific adenine glycosylase mutY homolog[imported] - Streptococcus pneumoniae (strain R6) gb|AAK99911.1| Similar to A/G-specific adenine glycosylase [Streptococcus pneumoniae R6] Length = 391 Score = 241 bits (614), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 115/189 (60%), Positives = 137/189 (72%) Query: 12 QEAKLFFSRFLLEWYQGQKRDLPWRRHRNPYYIWISEIMLQQTRVDTVIPYFNRFIERFP 71 +E + F LL WY KRDLPWRR +NPY+IW+SEIMLQQTRVDTVIPY+ RF++ FP Sbjct: 14 EEKVISFREKLLAWYDENKRDLPWRRSKNPYHIWVSEIMLQQTRVDTVIPYYERFLDWFP 73 Query: 72 TVESLADAPEEEVLKCWEGLGYYSRARNLQHAAKQVKEQYGGQVPNDRDAVFGLKGVGPY 131 TVESLA APEE +LK WEGLGYYSR RN+Q AA+Q+ +GGQ PN + + LKG+GPY Sbjct: 74 TVESLATAPEESLLKAWEGLGYYSRVRNMQAAAQQIMTDFGGQFPNTYEGISSLKGIGPY 133 Query: 132 TAGAILSIAFNRPEPAVDGNVMRVLSRYFLIEDDIAKGPTRVAMERLAAELIPEGEASHF 191 TAGAI SIAFN PEPAVDGNVMRVL+R F + DI R + + LI F Sbjct: 134 TAGAISSIAFNLPEPAVDGNVMRVLARLFEVNHDIGIPSNRKIFQAMMEILINPDRPGDF 193 Query: 192 NQALMELGA 200 NQALM+LG+ Sbjct: 194 NQALMDLGS 202 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 295,657,443 Number of extensions: 11560974 Number of successful extensions: 26508 Number of sequences better than 1.0e-05: 780 Number of HSP's gapped: 26045 Number of HSP's successfully gapped: 781 Length of query: 217 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 96 Effective length of database: 428,710,599 Effective search space: 41156217504 Effective search space used: 41156217504 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)