BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0032.p
         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_487244.1| hypothetical protein [Nostoc sp. PCC 7120] >gi|...    66   3e-10
ref|ZP_00112153.1| COG2363: Uncharacterized small membrane prote...    65   3e-10
ref|NP_841230.1| conserved hypothetical protein [Nitrosomonas eu...    59   3e-08
ref|NP_391672.1| alternate gene name: ipa-61d~similar to hypothe...    56   2e-07

>ref|NP_487244.1| hypothetical protein [Nostoc sp. PCC 7120]
 pir||AE2206 hypothetical protein alr3204 [imported] - Nostoc sp. (strain PCC
           7120)
 dbj|BAB74903.1| ORF_ID:alr3204~hypothetical protein [Nostoc sp. PCC 7120]
          Length = 126

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 54/114 (47%), Gaps = 1/114 (0%)

Query: 5   ALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGERSXX 64
           A+L  LSV  GAF +H L+  ISE  L++++TG  Y M              +       
Sbjct: 10  AILGGLSVAAGAFASHALRERISERSLEIFDTGARYQMYHALALLLVALLISRTPTPPTT 69

Query: 65  XXXXX-XXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEALS 117
                              YALS+TGIK+LGAITPLGGV FL GW  LA  A S
Sbjct: 70  LLASGWLFIIGIAIFSGSLYALSLTGIKILGAITPLGGVAFLLGWGALAVAAFS 123


>ref|ZP_00112153.1| COG2363: Uncharacterized small membrane protein [Nostoc
           punctiforme]
          Length = 126

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 54/112 (48%), Gaps = 1/112 (0%)

Query: 5   ALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQW-GERSX 63
           A+L  LSV  GAF +H L+  ISE  L+++ETG  Y M              +    +  
Sbjct: 10  AILGGLSVAAGAFASHALREKISERSLEIFETGARYQMYHALALFLVAILISRTESPQPT 69

Query: 64  XXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEA 115
                              YA+S+TGIK LGAI PLGGV FLAGW  LA+ A
Sbjct: 70  LIASGWLFLAGIAIFSGSLYAISLTGIKSLGAIAPLGGVAFLAGWGTLAFAA 121


>ref|NP_841230.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
 emb|CAD85084.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
          Length = 126

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 1/120 (0%)

Query: 1   MAWGALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGE 60
           +A GA+ A L V +GA G+H LK +++ D L  ++ GV YH               +  +
Sbjct: 6   LALGAVNAFLCVMLGALGSHGLKSILAPDILTTFQIGVQYHFYHAIGLILVGLAMDRLPQ 65

Query: 61  RSXXXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLGGVCFLAGWLCLAWEALSRNK 120
                                 Y +S+TG + LG + PLGG  ++AGWL  AW A  +NK
Sbjct: 66  ARALKFSGILMMTGIVLFSGTLYVVSLTGWRGLGMVAPLGGTSYMAGWLLFAW-ATWKNK 124


>ref|NP_391672.1| alternate gene name: ipa-61d~similar to hypothetical proteins
           [Bacillus subtilis]
 sp|P39619|YWDK_BACSU Hypothetical protein ywdK
 pir||S39716 ywdK protein - Bacillus subtilis
 emb|CAA51617.1| ipa-61d [Bacillus subtilis]
 emb|CAB15819.1| ywdK [Bacillus subtilis subsp. subtilis str. 168]
          Length = 113

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 47/97 (48%)

Query: 4   GALLAMLSVGIGAFGAHLLKPVISEDYLKVYETGVHYHMXXXXXXXXXXXXXXQWGERSX 63
           GA+ A+L+VG+GAFGAH L+  I + YL+V+ TGV YHM              +      
Sbjct: 8   GAINALLAVGLGAFGAHGLEGKIPDKYLQVWHTGVQYHMYHALGLFVVAFLADKLSGIGS 67

Query: 64  XXXXXXXXXXXXXXXXXXXYALSITGIKVLGAITPLG 100
                              Y LS+T I +LGAITPLG
Sbjct: 68  VTTAGWLMFAGIVLFSGSLYILSVTQISILGAITPLG 104


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.325    0.140    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 123,917,974
Number of extensions: 2717942
Number of successful extensions: 9290
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 9285
Number of HSP's successfully gapped: 11
Length of query: 120
Length of database: 757,237,578
Length adjustment: 84
Effective length of query: 36
Effective length of database: 529,169,262
Effective search space: 19050093432
Effective search space used: 19050093432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)