BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0301.0023.p
         (54 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_241897.1| BH1031~unknown conserved protein [Bacillus halo...    72   3e-12
ref|NP_654484.1| hypothetical protein predicted by GeneMark [Bac...    71   1e-11
ref|NP_830370.1| Glycosyltransferase [Bacillus cereus ATCC 14579...    70   1e-11
ref|NP_388779.1| alternate gene name: yzdC~similar to hypothetic...    70   2e-11
ref|NP_693568.1| hypothetical protein OB2647 [Oceanobacillus ihe...    69   3e-11

>ref|NP_241897.1| BH1031~unknown conserved protein [Bacillus halodurans]
 sp|Q9KE27|YA31_BACHD Hypothetical UPF0229 protein BH1031
 pir||G83778 hypothetical protein BH1031 [imported] - Bacillus halodurans
           (strain C-125)
 dbj|BAB04750.1| BH1031~unknown conserved protein [Bacillus halodurans]
          Length = 388

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 43/51 (84%)

Query: 1   MFGYGEVNQYNRSSTLMSAYRHLKQEQFMHYVIKDKKEVYQALKTFFGKRE 51
           MFGYGEVNQY+R STLM+AY++LK  +F  YV+K+K +VY+A+KTFF K E
Sbjct: 334 MFGYGEVNQYSRHSTLMNAYKNLKDPRFRSYVLKEKGDVYRAMKTFFKKEE 384


>ref|NP_654484.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_843086.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_976933.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 sp|Q81YT1|Y551_BACAA Hypothetical UPF0229 protein BA0551
 gb|AAP24572.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS39541.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 391

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 1   MFGYGEVNQYNRSSTLMSAYRHLKQEQFMHYVIKDKKEVYQALKTFF 47
           MFGYGEVNQYNR STLMSAY+++K E F +Y++K K +V+ A+K+FF
Sbjct: 336 MFGYGEVNQYNRHSTLMSAYKNIKDENFRYYILKQKADVFHAMKSFF 382


>ref|NP_830370.1| Glycosyltransferase [Bacillus cereus ATCC 14579]
 sp|Q81I66|Y551_BACCR Hypothetical UPF0229 protein BC0551
 gb|AAP07571.1| Glycosyltransferase [Bacillus cereus ATCC 14579]
          Length = 391

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/47 (63%), Positives = 40/47 (85%)

Query: 1   MFGYGEVNQYNRSSTLMSAYRHLKQEQFMHYVIKDKKEVYQALKTFF 47
           MFGYGEVNQYNR STLMSAY+++K E F +Y++K K +V+ A+K+FF
Sbjct: 336 MFGYGEVNQYNRHSTLMSAYKNIKDENFRYYILKQKADVFHAMKSFF 382


>ref|NP_388779.1| alternate gene name: yzdC~similar to hypothetical proteins
           [Bacillus subtilis]
 sp|P45742|YHBH_BACSU Stress response UPF0229 protein yhbH
 pir||B69821 conserved hypothetical protein yhbH - Bacillus subtilis
 emb|CAB12726.1| yhbH [Bacillus subtilis subsp. subtilis str. 168]
          Length = 392

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 42/52 (80%)

Query: 1   MFGYGEVNQYNRSSTLMSAYRHLKQEQFMHYVIKDKKEVYQALKTFFGKREA 52
           +F YGEVNQYNR STLMSAY+++K E+F +Y++K K +V+QALK FF   E+
Sbjct: 334 LFCYGEVNQYNRHSTLMSAYKNVKDEKFKYYILKQKSDVFQALKNFFRNEES 385


>ref|NP_693568.1| hypothetical protein OB2647 [Oceanobacillus iheyensis HTE831]
 sp|P59350|YQ47_OCEIH Hypothetical UPF0229 protein OB2647
 dbj|BAC14603.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 390

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 42/50 (84%)

Query: 1   MFGYGEVNQYNRSSTLMSAYRHLKQEQFMHYVIKDKKEVYQALKTFFGKR 50
           MFGYGEVN YNR STLM+AY++++  +F HY++K+K +VY A+K+FF K+
Sbjct: 337 MFGYGEVNGYNRYSTLMNAYKNIEDPKFKHYILKEKADVYHAMKSFFHKQ 386


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 71,700,815
Number of extensions: 1808086
Number of successful extensions: 5343
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 5343
Number of HSP's successfully gapped: 6
Length of query: 54
Length of database: 757,237,578
Length adjustment: 26
Effective length of query: 28
Effective length of database: 686,645,004
Effective search space: 19226060112
Effective search space used: 19226060112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)