BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0301.0011.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_624096.1| Transcriptional regulator [Thermoanaerobacter t... 283 4e-75 ref|NP_658047.1| Peripla_BP_like, Periplasmic binding proteins a... 281 1e-74 ref|NP_980355.1| maltose operon transcriptional repressor [Bacil... 280 3e-74 ref|NP_833729.1| Transcriptional regulator, LacI family [Bacillu... 278 1e-73 ref|NP_243789.1| transcriptional regulator involved in carbon ca... 277 2e-73 >ref|NP_624096.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM25700.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 341 Score = 283 bits (724), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 146/339 (43%), Positives = 219/339 (64%), Gaps = 4/339 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 M VTIKDVAK+A V+PSTVSRV++ PRIS ET +V + MEE+GY PN +A+SL SK T Sbjct: 5 MNVTIKDVAKRANVAPSTVSRVIADSPRISKETKERVWKAMEELGYYPNAIARSLASKVT 64 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 N++ +I+P+ EE FSN FF E++RGI + R YD+L+S+ N++EE E+V R++KG+ Sbjct: 65 NTLGLIMPRSTEEAFSNPFFPEVMRGISVVAHREKYDLLLSTSGNKEEEKEAVIRMVKGK 124 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRSDRYEDILSVDNDNIMASFDATNHLISM 180 RVDG+ILL SR D +I +L +PFV++G+ + VDNDNI AS ATN+LI Sbjct: 125 RVDGIILLSSRTTDELIPWLRDEKFPFVVIGKPLDARGVYWVDNDNIGASKLATNYLIKH 184 Query: 181 GHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMNL 240 GH I F+SG +VS DRL+GY+ A+ +GL + E + + EF +D GYRAM + Sbjct: 185 GHREIAFISGSLEYVVSLDRLDGYKLALEENGLTFKRELVEQEEFSEDGGYRAMMKILER 244 Query: 241 PNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXYH 300 +PT +V DD+++FGV+R + ++VPED++IV FNN + Sbjct: 245 A-KPTGVVVTDDVMAFGVIRATIDKGFRVPEDISIVGFNNIPLSAFANPPLTTIDISTFE 303 Query: 301 LGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSM 339 LG ++++LI +++ + ++ ++P +LI R+S + Sbjct: 304 LGIKSAELLIARLKQKEIE---SDHIIVPVKLIERKSCV 339 >ref|NP_658047.1| Peripla_BP_like, Periplasmic binding proteins and sugar binding domain of the LacI family [Bacillus anthracis A2012] ref|NP_846461.1| maltose operon transcriptional repressor [Bacillus anthracis str. Ames] gb|AAP27947.1| maltose operon transcriptional repressor [Bacillus anthracis str. Ames] Length = 343 Score = 281 bits (719), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 138/345 (40%), Positives = 222/345 (64%), Gaps = 4/345 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAKKA V+PSTVSRV++ +P IS +T R+V+++M E+GY PN+ A++L ++TT Sbjct: 1 MTVTIKDVAKKANVAPSTVSRVIADNPSISEKTKRRVRKVMSELGYHPNLNARNLANQTT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 ++ +++P A + F N FF E+IRGI + + GY + +S+G E E V ++++GR Sbjct: 61 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEDEIFNGVVKMVQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 ++ G+ILLYSR++D +I +L +PFVL+G+ DR E+I VDNDN A+ + +LIS Sbjct: 121 QIGGIILLYSRENDRIIQYLHKQNFPFVLIGKPYDRKEEITYVDNDNYTAAREVAEYLIS 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 +GH++I F+ G +L+V+RDRL G A+ + + + E+I+ +F ++SG +A+ M Sbjct: 181 LGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMG 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 L PTA++A DD++ GVL L++ + VP+D++IVSFNN Y Sbjct: 241 LKQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIY 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSMHSPVK 344 LGY A++ L+ ++ N + +IPH+L+ R++ H K Sbjct: 301 QLGYEAAKALVDKVE---NAESTAKCIIIPHKLLKRQTCDHYATK 342 >ref|NP_980355.1| maltose operon transcriptional repressor [Bacillus cereus ATCC 10987] gb|AAS42963.1| maltose operon transcriptional repressor [Bacillus cereus ATCC 10987] Length = 343 Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 137/341 (40%), Positives = 221/341 (64%), Gaps = 4/341 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAKKA V+PSTVSRV++ +P IS +T R+V+++M E+GY PN+ A++L ++TT Sbjct: 1 MTVTIKDVAKKANVAPSTVSRVIADNPSISEKTKRRVRKVMSELGYHPNLNARNLANQTT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 ++ +++P A + F N FF E+IRGI + + GY + +S+G E E V ++++GR Sbjct: 61 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEDEIFNGVVKMVQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 ++ G+ILLYSR++D +I +L +PFVL+G+ DR E+I VDNDN A+ + +LIS Sbjct: 121 QIGGIILLYSRENDRIIQYLHKQNFPFVLIGKPYDRKEEITYVDNDNYTAAREVAEYLIS 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 +GH++I F+ G +L+V+RDRL G A+ + + + E+I+ +F ++SG +A+ M Sbjct: 181 LGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMA 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 L PTA++A DD++ GVL L++ + VP+D++IVSFNN Y Sbjct: 241 LKQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIY 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSMH 340 LGY A++ L+ ++ N + +IPH+L+ R++ H Sbjct: 301 QLGYEAAKALVDKVE---NAESTAKCIIIPHKLLKRQTCDH 338 >ref|NP_833729.1| Transcriptional regulator, LacI family [Bacillus cereus ATCC 14579] gb|AAP10930.1| Transcriptional regulator, LacI family [Bacillus cereus ATCC 14579] Length = 340 Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/341 (39%), Positives = 222/341 (65%), Gaps = 4/341 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 MTVTIKDVAK+A V+PSTVSRV++ +P IS +T R+V+++M E+GY PN+ A++L ++TT Sbjct: 1 MTVTIKDVAKQANVAPSTVSRVIADNPSISEKTKRRVRKVMSELGYHPNLNARNLANQTT 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 ++ +++P A + F N FF E+IRGI + + GY + +S+G E+E V ++++GR Sbjct: 61 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGRS-DRYEDILSVDNDNIMASFDATNHLIS 179 ++ G+ILLYSR++D +I +L +PFVL+G+ DR ++I VDNDN A+ + +LIS Sbjct: 121 QIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS 180 Query: 180 MGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFFMN 239 +GH++I F+ G +L+V+RDRL G A+ + + + E+I+ +F ++SG +A+ M Sbjct: 181 LGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMG 240 Query: 240 LPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXXXY 299 L PTA++A DD++ GVL L++ + VP+D++IVSFNN Y Sbjct: 241 LQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIY 300 Query: 300 HLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESSMH 340 LGY A++ L+ ++ N + +IPH+L+ R++ H Sbjct: 301 QLGYEAAKALVDKVE---NAESTAKCIIIPHKLLKRQTCDH 338 >ref|NP_243789.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] pir||C84015 transcription regulator involved in carbon catabolite control BH2923 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06642.1| transcriptional regulator involved in carbon catabolite control [Bacillus halodurans] Length = 344 Score = 277 bits (709), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 139/341 (40%), Positives = 223/341 (65%), Gaps = 6/341 (1%) Query: 1 MTVTIKDVAKKAGVSPSTVSRVLSGHPRISLETSRKVKEIMEEMGYTPNMMAKSLVSKTT 60 M VTIKDVAK A V+PSTVSRV++ +PRIS T +V+E ME++GY PN A+SLV+++T Sbjct: 1 MAVTIKDVAKLAKVAPSTVSRVIANNPRISQRTKERVREAMEQLGYYPNYNARSLVNQST 60 Query: 61 NSICIILPKPAEELFSNLFFMELIRGIVTQSSRSGYDVLISSGANEKEELESVSRLLKGR 120 ++ II+P A F N FF E+IRGI T++ Y + +S+G E+E L V +++ R Sbjct: 61 KTLGIIIPSSARIAFQNPFFPEVIRGITTKAYVEKYGLYLSTGQTEEELLAEVKEMVQSR 120 Query: 121 RVDGVILLYSRKDDAVIDFLESGGYPFVLVGR--SDRYEDILS-VDNDNIMASFDATNHL 177 RVDG++LLY+++DD V+ +L +PFVLVGR D+ ++++S V+NDN+ A+ T ++ Sbjct: 121 RVDGILLLYAKQDDKVMPYLIEENFPFVLVGRPYDDQLKELVSFVNNDNVKAAKMVTEYI 180 Query: 178 ISMGHERIGFVSGPPNLIVSRDRLEGYRKAMANSGLEMRAEWIVEGEFLQDSGYRAMSFF 237 + +GH +IGF+ G V+ D EGYR+A+AN+G+ R E++V + +++ G A+ Sbjct: 181 LLLGHRKIGFIGGNLEYTVTIDHKEGYRRALANAGIPFREEYVVYYDEVEEGGQEAVIEL 240 Query: 238 MNLPNRPTALVAVDDMVSFGVLRGLNELNYKVPEDLAIVSFNNXXXXXXXXXXXXXXXXX 297 M+L PTAL+ DD+++ GVLR L+E++ VPE+++I+SFNN Sbjct: 241 MSLEEPPTALIVADDLMALGVLRMLDEMDVSVPEEMSIISFNNAMISELSSPPLTTVDIH 300 Query: 298 XYHLGYTASQVLIQSIQKPDNHDGYTNRFVIPHRLIVRESS 338 + LG+ A++ LI+ ++ P+ + +IPH+LI R++ Sbjct: 301 IFDLGFQATECLIEKMKDPERPPA---QIIIPHKLIKRQTC 338 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 461,389,105 Number of extensions: 17236196 Number of successful extensions: 48896 Number of sequences better than 1.0e-05: 1170 Number of HSP's gapped: 46941 Number of HSP's successfully gapped: 1170 Length of query: 345 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 219 Effective length of database: 415,135,104 Effective search space: 90914587776 Effective search space used: 90914587776 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)