BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0035.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_809208.1| ABC transporter ATP-binding protein [Bacteroide... 266 5e-70 ref|NP_763672.1| ABC transporter (ATP-binding protein) [Staphylo... 264 2e-69 gb|EAH87070.1| unknown [environmental sequence] 253 3e-66 ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC tra... 253 4e-66 ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobact... 245 7e-64 >ref|NP_809208.1| ABC transporter ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75402.1| ABC transporter ATP-binding protein [Bacteroides thetaiotaomicron VPI-5482] Length = 297 Score = 266 bits (679), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 134/290 (46%), Positives = 189/290 (65%), Gaps = 3/290 (1%) Query: 1 MELIIDHLTKTY-GGKQALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVE 59 M +II +L K Y G AL +V+ + G+ GLLGPNGAGK+TLMR+L L+EPTSGQVE Sbjct: 1 MSIIIKNLNKIYPNGNHALKDVNLEIPAGMFGLLGPNGAGKSTLMRILVALMEPTSGQVE 60 Query: 60 IGGISL-TDKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLE 118 I G L + +IR I+GYLPQ+F F+ E +DY A LSG+ +RK+ +D +LE Sbjct: 61 ICGYDLMKQRKEIRGILGYLPQDFRFFAKYKTYEFLDYAARLSGMTHSRQRKQAVDEMLE 120 Query: 119 LVNLTEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKF 178 V L + R LSGGMKRRLG+AQA+IH PK++IVDEPT GLDPEERIRFR LLS+ Sbjct: 121 NVGLFDVRERYANKLSGGMKRRLGIAQALIHHPKVIIVDEPTTGLDPEERIRFRNLLSEV 180 Query: 179 AEGRI-VLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWS 237 +E + ++LSTH+V D+ STC M ++++G + ++G D+ A G+VW + Sbjct: 181 SENDVTIILSTHIVGDISSTCNNMALMNRGQVSFNGSPQDMLKLAEGKVWRIRAAGDQLH 240 Query: 238 RDSERFPVLSAVPEGAGMRVRVLSDEQPYPGAQQAVPSIEDAYLYLMRRE 287 +++PV+S +P G V+V++DE A+ P++E AY+Y M + Sbjct: 241 EIDKKYPVISTIPSGTIWEVQVVADEVEGYEAEPFPPNLEHAYVYYMENQ 290 >ref|NP_763672.1| ABC transporter (ATP-binding protein) [Staphylococcus epidermidis ATCC 12228] gb|AAO03714.1| ABC transporter (ATP-binding protein) [Staphylococcus epidermidis ATCC 12228] Length = 301 Score = 264 bits (675), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/289 (43%), Positives = 193/289 (66%), Gaps = 4/289 (1%) Query: 2 ELIIDHLTKTYGGKQ-ALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVEI 60 E++I L+K+Y GK+ ALN++ + G+ G+LG NG+GK+TLM ++AT+L+P+ G V I Sbjct: 3 EIVIKGLSKSYDGKKDALNSLDLVIPNGMFGILGRNGSGKSTLMNIIATILQPSKGTVTI 62 Query: 61 GGISLTDKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELV 120 GI + + +IR+++GYLPQ+F FYP M V E + YL LS + + + + +D +L V Sbjct: 63 NGIEIKNSQKIRQMIGYLPQDFDFYPNMKVSEVLYYLGFLSKI-NQKDFDKYVDLILRKV 121 Query: 121 NLTEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAE 180 NL + + +VK+LSGGMK+RLG+AQA++H+PK++IVDEPTAGLDPEER+R R LLS AE Sbjct: 122 NLIDYKNKKVKSLSGGMKKRLGIAQAILHDPKVIIVDEPTAGLDPEERVRLRNLLSDLAE 181 Query: 181 GRIVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWSRDS 240 +IV++STH+V D+ESTC ++ +L KGSL Y G I L + ++ L +E Sbjct: 182 NKIVIISTHIVSDIESTCNKIAILDKGSLVYKGDIPSLIQQSDDHIYEINLSPSELESFR 241 Query: 241 ERFPVLSAVPE-GAGMRVRVLSDEQPYPGAQQAVPSIEDAYLYLMRREE 288 E ++ E ++VR +S E A++ EDAY+Y +++++ Sbjct: 242 ENDLFITKTQEIDNKLKVRFIS-ETKVANAKKVKADFEDAYMYFLKKQQ 289 >gb|EAH87070.1| unknown [environmental sequence] Length = 295 Score = 253 bits (647), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 123/283 (43%), Positives = 179/283 (63%), Gaps = 2/283 (0%) Query: 1 MELIIDHLTKTYGGK-QALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVE 59 M LIID+++KTY +AL NVS + G+ GLLGPNGAGK+TLMR +A L + +G ++ Sbjct: 1 MRLIIDNVSKTYDNNVEALKNVSLEIENGMFGLLGPNGAGKSTLMRTIAGLQDADAGTIK 60 Query: 60 IGGISL-TDKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLE 118 +G I + +DK +R I+GYLPQEF YP +S LE D+LA++ G+ + ER++ LL Sbjct: 61 VGDIDVKSDKQSLREILGYLPQEFGLYPKVSALELFDHLAVMKGIVDKNEREKLTKSLLS 120 Query: 119 LVNLTEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKF 178 NL + R ++ SGGMK+R G+AQA+I P+L+IVDEPTAGLDP ER RF LLS+ Sbjct: 121 QTNLWKYRNRKLGTFSGGMKQRFGIAQALIGNPQLIIVDEPTAGLDPTERNRFHNLLSEI 180 Query: 179 AEGRIVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWSR 238 E IV+LSTH+VEDV C +M ++ G +R G L VW+ +D+ ++ Sbjct: 181 GENVIVILSTHIVEDVSDLCSRMAIISDGRVRLVGEPASLIKGLTKHVWSGLIDKKDYKS 240 Query: 239 DSERFPVLSAVPEGAGMRVRVLSDEQPYPGAQQAVPSIEDAYL 281 F ++S+ ++VR+L +++P G ++ P IED Y Sbjct: 241 TKNDFQLISSKLYMGKVQVRILDNKKPLDGFEKTSPDIEDIYF 283 >ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75408.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] Length = 503 Score = 253 bits (645), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 116/271 (42%), Positives = 185/271 (68%), Gaps = 1/271 (0%) Query: 16 QALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIGGISL-TDKSQIRRI 74 +AL VSF + G+ GLLGPNGAGK+TLMR++ + E + G + I G+ + +++ + Sbjct: 230 KALRGVSFEIQTGMFGLLGPNGAGKSTLMRVICGIFEQSYGSIWINGLDTRIYREELQSL 289 Query: 75 VGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELVNLTEQRRTRVKALS 134 +G+LPQEF Y M+ E +DY A+L G+ R+ R+D++L+ V++ E++ ++ + S Sbjct: 290 IGFLPQEFGTYENMTSWEFLDYQAILKGIVDGDLRRERLDYVLKAVHMYERKDEKIGSFS 349 Query: 135 GGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAEGRIVLLSTHVVEDV 194 GGMK+R+G+A ++H P++L+VDEPTAGLDP ERIRFR LL + ++ RIV+ STH++ED+ Sbjct: 350 GGMKQRIGIALILLHLPRILVVDEPTAGLDPRERIRFRNLLVELSKDRIVIFSTHIIEDI 409 Query: 195 ESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWSRDSERFPVLSAVPEGAG 254 S+C Q+ V++KG L+Y G D+ A G+VW +D+ E+ + ++ V+ + EG Sbjct: 410 SSSCNQVVVINKGELKYFGDPSDMVEMANGKVWQFNIDKTEFEKVLDKSLVIHHIQEGDT 469 Query: 255 MRVRVLSDEQPYPGAQQAVPSIEDAYLYLMR 285 +RVR LS QPY GA + ++EDAYL L++ Sbjct: 470 IRVRYLSVGQPYEGAVEVEANLEDAYLCLLK 500 >ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] pir||D87691 ABC transporter, ATP-binding protein CC3566 [imported] - Caulobacter crescentus gb|AAK25528.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] Length = 294 Score = 245 bits (626), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 124/281 (44%), Positives = 176/281 (62%), Gaps = 2/281 (0%) Query: 3 LIIDHLTKTYG-GKQALNNVSFRVGEGIHGLLGPNGAGKTTLMRLLATLLEPTSGQVEIG 61 LII++LT YG G +AL+ VS + G++GLLGPNGAGK+TLMR +ATL PTSG + G Sbjct: 2 LIIENLTHVYGNGTRALDEVSLTIPRGMYGLLGPNGAGKSTLMRTIATLQAPTSGHIRFG 61 Query: 62 GIS-LTDKSQIRRIVGYLPQEFAFYPGMSVLEAMDYLALLSGVKGRAERKRRIDHLLELV 120 I L ++R+ +GYLPQ+F YP +S + +D++A+L G+ G ERK ++HLL V Sbjct: 62 DIDVLKHPEELRKTLGYLPQDFGVYPRVSAYDMLDHMAVLKGISGGKERKATVEHLLNQV 121 Query: 121 NLTEQRRTRVKALSGGMKRRLGVAQAMIHEPKLLIVDEPTAGLDPEERIRFRRLLSKFAE 180 NL + R+ + SGGM++R G+AQA+I +P+L+IVDEPTAGLDPEER RF LL++ E Sbjct: 122 NLWDVRKKAIAGFSGGMRQRFGIAQALIGDPRLIIVDEPTAGLDPEERNRFLNLLAEIGE 181 Query: 181 GRIVLLSTHVVEDVESTCEQMTVLHKGSLRYHGRIGDLTAAAAGRVWTAELDRAEWSRDS 240 +V+LSTH+VEDV C M ++ G++ G DL A GR+W +D+AE Sbjct: 182 NVVVILSTHIVEDVSDLCPAMAIICNGAIVREGAPADLVAQLKGRIWKKIIDKAELEAAK 241 Query: 241 ERFPVLSAVPEGAGMRVRVLSDEQPYPGAQQAVPSIEDAYL 281 R+ V+S + + S+ P G +ED Y Sbjct: 242 ARYKVISTRLLAGRTVIHIESETDPGDGFTAVEGGLEDVYF 282 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 419,899,105 Number of extensions: 16810536 Number of successful extensions: 116559 Number of sequences better than 1.0e-05: 19766 Number of HSP's gapped: 94198 Number of HSP's successfully gapped: 20991 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)