BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0032.p (1160 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00042381.1| COG2202: FOG: PAS/PAC domain [Magnetococcus s... 347 8e-94 ref|NP_953363.1| sensory box histidine kinase/response regulator... 330 1e-88 ref|ZP_00054895.1| COG0642: Signal transduction histidine kinase... 328 4e-88 ref|ZP_00097625.1| COG2202: FOG: PAS/PAC domain [Desulfitobacter... 327 8e-88 ref|ZP_00043158.1| COG2202: FOG: PAS/PAC domain [Magnetococcus s... 325 4e-87 >ref|ZP_00042381.1| COG2202: FOG: PAS/PAC domain [Magnetococcus sp. MC-1] Length = 1120 Score = 347 bits (891), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 330/1171 (28%), Positives = 546/1171 (46%), Gaps = 167/1171 (14%) Query: 56 IALPEDEPTADHELIMKYLLQSPGAAVDKEKRFVRKDGSIIWIAL--HIFLTFDEATGAP 113 +A+P+D P + + Q+PG V+ E F + G I W + + + +G+P Sbjct: 7 LAIPQDRPAILQAMAQAW--QNPGQPVEVE--FHVEIGEI-WTKVIRCVMQSTPRPSGSP 61 Query: 114 VHLIAEMTEITS-RKLAENKIE-EDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLL 171 L + IT RK+ + + E+RL NLI + + + D Y S E++L Sbjct: 62 QRLFGSVQNITLLRKIGDALVHSEERL--NLILEGAQEGMWEWDIASGALYFSCHWERML 119 Query: 172 GYSMDEVIGRKRPDFY-------HEEDAIE----MKQHGKMYSDSDVFTQRARHRDGHYL 220 G+ E+ P Y H +D ++QH + ++ R + G +L Sbjct: 120 GFEPGEI-----PHTYQAWITQIHPDDKTATLEALEQHLQGHTQHFEIEHRQHTKKGTWL 174 Query: 221 WLENSFQVMR-NSKGGVEKVLTIARDITER--------------KKYENLLATAQELGNI 265 WL +V++ + +++ ++T+R K+ E L G + Sbjct: 175 WLLTRGKVVQWGDQQTPLRMMGTQMNVTDRIRGEQALRFAHTQLKQQERLFHDYFAHGVV 234 Query: 266 GSWEWDSLNERMTVSKQLRSIFDLCQDSGTAT----------HSQ--IDYVQLLARVVPE 313 G + +KQL + + CQ H ID + L R + E Sbjct: 235 GMAITTPDRLFLHANKQLCVLLE-CQPKALLNTPIDQWLDPRHRDYYIDQYERLVRHLTE 293 Query: 314 DMAPLQAELSKTLKSGVNGQSVFRIENDKGERKFIYTHWEVVLDTAGKTLQINGIVQDIT 373 + EL L + + G R + + DT+G+ D++ Sbjct: 294 NF-----ELELPLCTAL------------GRRVSVNLSTRALWDTSGRITHCIHTAVDLS 336 Query: 374 ERYRMEEQLRESERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLGYTPEEMEGSS 433 E + Q++ESE+ +R I E++ +++ D T + + +LGY+P+E+ G S Sbjct: 337 EHNHIIAQVKESEKRFRAIFEHAGLAVAQG--DIHGTIIKVNSAYANLLGYSPDELVGRS 394 Query: 434 GMRYVHPEDMDKVRAYLQETMEGKK-LEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAE 492 HP D + + L + + K+ + + R L KDGS++W E+T+ +++ Sbjct: 395 LQSLTHPSDFPENLSLLHDLAKKKRSVYTLEKRILHKDGSWIWVESTVTALTNAMDEPEF 454 Query: 493 MVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMD-LNGHIQSLNASLQQLTGYS 551 ++ +TR+I++R++ E +ESE Y+ LF+ N + +D +NG I N + GYS Sbjct: 455 LINMTRDITDRRRAEAALVESEQRYRQLFQRNKAVELLIDPVNGQIVDANMAAADYYGYS 514 Query: 552 YDSL--LHASHTEIIDPDELGMAEQRFELAAKGLPQIFESRLIHREGYSVEVSVIYVPIM 609 D+L ++ + I+ DE+ R E + Q F RL E VE+ P+ Sbjct: 515 CDTLRQMNIAQINILTRDEIEQEMLRAEQENRNHFQ-FRHRLSSGEVRDVEIH--SGPVE 571 Query: 610 VNSQVVGVFSITSNITE---------HKRHLQQIEKLSYEHALILNSVSEGIFGMNLQ-G 659 + + + ++SI +ITE H RH Q+E IL+S+ ++ + Q G Sbjct: 572 IQGRAL-LYSIVHDITERRRIEAALSHNRH--QLEASHGRLITILDSLQSIVYVADPQTG 628 Query: 660 ETMFINPAASTMLGYEPGELAGNIK------LHTVEQRWLDAEPYAGGR-------WAQP 706 E ++ N ++AGN+K L+ ++R P + R W Sbjct: 629 EILYHNRYLF--------DIAGNLKGEREELLYPNKKRLSQGTPASRSRGRNHAQSWEYC 680 Query: 707 DSLSGQLSSEDKEGVFWRQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITEEKAIVRAKE 766 ++ + S + + W DG + R+ D K + E+A+++AKE Sbjct: 681 SPINHRWYSAHSQPITW-VDGRTV----RLEVATDINSLKQS---------EQALLQAKE 726 Query: 767 SAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHI 826 AE A+RAKS+FLA MSH++RTPMN ++GM +LL + LD EQ +Y +II ++ +LL + Sbjct: 727 LAESANRAKSDFLATMSHDIRTPMNAVLGMVELLGESSLDPEQSHYLKIIRRAGSTLLSL 786 Query: 827 LNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVT 886 +N++LD SKIEAG + LEL L++ + +VM++ KA EKG V Sbjct: 787 INDILDLSKIEAGQLKLELDDFTLAETVEHVMDILRHKASEKGLQLQTHLHIPPQQRVRG 846 Query: 887 DEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGSQGL 946 D RLRQIL+NL+GNAVKFT++G + +T + + D F V DTG GI Q + Sbjct: 847 DAQRLRQILLNLLGNAVKFTQQGSVSLT-----LQQQPDGQYSFQVADTGPGIAPHRQKI 901 Query: 947 LFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLS 1006 +F+ F Q +R +GG+GLGL+I KLV + G + ++S G G+ F+FT LPL+ Sbjct: 902 IFEPFVQEESGTHRHFGGSGLGLSICHKLVTAMRGTLWLKSQLGHGSIFYFT----LPLA 957 Query: 1007 EPAYQQIPIAGMENGNGKEAPDRTSSEGE-YGPLS--------ILVAEDHPVNLQLLQAY 1057 ME APD S + + P+S +LV +D N L+QA+ Sbjct: 958 ---------TAME-----PAPDEVSPQSVLHAPVSLTQLVNKRLLVVDDAEDNRNLIQAF 1003 Query: 1058 LKKRGYYADVALNGEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIR-HEM----GLSP 1112 LK +A +GE AV + + + +DL+ MDIQMP M+G+EAT +IR HE +P Sbjct: 1004 LKSCQMQIQMAEDGEQAVRLCQEQRFDLILMDIQMPIMNGLEATRLIRQHEQMQHKSRTP 1063 Query: 1113 VIVAATAFARKEDKELCLRAGMQDFISKPIS 1143 I+A +A A + L AG +SKPI+ Sbjct: 1064 -IIALSAHAMLDVNNDALAAGCDLHLSKPIA 1093 >ref|NP_953363.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] gb|AAR35690.1| sensory box histidine kinase/response regulator [Geobacter sulfurreducens PCA] Length = 982 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 250/706 (35%), Positives = 374/706 (52%), Gaps = 75/706 (10%) Query: 482 HISSGPGGTAEMVCVTRNISERKQYELKQ----LESENLYKSLFEYNPSAISAMDLNGHI 537 H++ G ++ R I+ + L Q ESE + L E I D G + Sbjct: 181 HLTFWAAGLGGIILAARRITRDDRSLLLQQARLAESEERNRLLSEVALEGIVIHD-RGIV 239 Query: 538 QSLNASLQQLTGYSYDSLLHASHTEII-DPDELGMAEQRFELAAKGLPQIFESRLIHREG 596 Q +NA +L GY + L + ++ PD++G + ++ + ++ R + ++G Sbjct: 240 QDMNARFAKLFGYPREELEGINVISLLFHPDDIG---SMIDKMSRAHSEPYQVRGVKKDG 296 Query: 597 YSVEVSVIYVPIMVNSQVVGVFSITSNITEHKRH---LQQIEKLS---YEH----ALILN 646 +V + + + V V S+ +ITE +R L+Q E L +EH LI++ Sbjct: 297 TVFDVEIEGYNLQHGDKSVRVVSV-RDITERRRAEEALRQSEALFRNLFEHHAAVKLIID 355 Query: 647 SVSEGIFGMNLQGETMFINPAASTMLGYEPGEL-AGNIKLHTVEQRWLDAEPYAGGRWAQ 705 VS G + N AA + G+ +L A NI+ + Sbjct: 356 PVS---------GAIVDANNAAVSFYGWSREQLRAMNIRDINM---------------LS 391 Query: 706 PDSLSGQL-SSEDKEGVFW-----RQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITE-- 757 P+ L +L ++++ E + + R D S V+ S + G R+ + D+TE Sbjct: 392 PEELVSELENTKNMERIHFFFRHRRADDSVRDVEVFSSRIEVKG-REYLHSIVHDVTERK 450 Query: 758 --EKAIVRAKESAEQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEI 815 E+ ++ AKE AE A+RAKSEFLA MSHE+RTPMNG++GM LL T L +EQ+ Y EI Sbjct: 451 RAEEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLETGLADEQRRYAEI 510 Query: 816 INKSSESLLHILNEVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXX 875 + S+ SLL +++++LDFSKIEAG + +E DL ++ ++ E KA EKG Sbjct: 511 VRTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCL 570 Query: 876 XXXXXXXXVVTDEIRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLV-IRFTVKD 934 ++ D +RL+Q+LVNL GNA+KFT +GEI V G S+ +TGD V +RF V+D Sbjct: 571 LRPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVG--SLTKTGDSVKLRFAVRD 628 Query: 935 TGIGIPQGSQGLLFQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAE 994 TGIGIP LLF+ F+Q SI RKYGGTGLGLAI K+LV+++GG IGV S G G+E Sbjct: 629 TGIGIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSE 688 Query: 995 FFFTIHVFLPLSEPAYQQIPIAGMENGNGKEAPDRTSSEGEYGPLSILVAEDHPVNLQLL 1054 F+FT Q + + E +G + P + S+ + + IL+ ED+ N Q+ Sbjct: 689 FWFTASF-------GTQNLRDSSPEP-DGGDGPLQLLSDLGHDDVRILLVEDNATNRQVA 740 Query: 1055 QAYLKKRGYYADVALNGEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIRHEMGLSPV- 1113 +K+ G D A NG A++++ + PYDLV MD+QMP MDG EAT IR SPV Sbjct: 741 LGIIKRLGLRGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFEATRHIRDVR--SPVL 798 Query: 1114 -----IVAATAFARKEDKELCLRAGMQDFISKPISPAEVDRVLREW 1154 ++A TA A K D+ CL AGM D+++KPI P + +L +W Sbjct: 799 NHEIPVIALTAHAMKGDRRKCLDAGMNDYLAKPIFPDALAEMLVKW 844 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 103/229 (44%), Gaps = 25/229 (10%) Query: 350 THWEVVLDTAGKTLQINGIVQDITERYRMEEQLRESERNYRLISENSLD--FISRNATDN 407 T W L G L I +D + +L ESE RL+SE +L+ I Sbjct: 183 TFWAAGL--GGIILAARRITRDDRSLLLQQARLAESEERNRLLSEVALEGIVIHDRGIVQ 240 Query: 408 EATYLYASPVCLPMLGYTPEEMEGSSGMRYV-HPEDMDKVRAYLQETMEGKKLEPIMFRF 466 + +A + GY EE+EG + + + HP+D+ + + M EP R Sbjct: 241 DMNARFAK-----LFGYPREELEGINVISLLFHPDDI----GSMIDKMSRAHSEPYQVRG 291 Query: 467 LCKDGSYLWTET---TLRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEY 523 + KDG+ E L+H G + V R+I+ER++ E +SE L+++LFE+ Sbjct: 292 VKKDGTVFDVEIEGYNLQH-----GDKSVRVVSVRDITERRRAEEALRQSEALFRNLFEH 346 Query: 524 NPSAISAMD-LNGHIQSLNASLQQLTGYSYDSL--LHASHTEIIDPDEL 569 + + +D ++G I N + G+S + L ++ ++ P+EL Sbjct: 347 HAAVKLIIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEEL 395 >ref|ZP_00054895.1| COG0642: Signal transduction histidine kinase [Magnetospirillum magnetotacticum] Length = 1043 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 249/804 (30%), Positives = 394/804 (49%), Gaps = 87/804 (10%) Query: 378 MEEQLRESERNYRLISENSLDFISRNA------TDNEATYLYASPVCLPMLGYTPEEMEG 431 MEE+LR + + R ++ L I D T + +P L + GY +E+ G Sbjct: 1 MEEELRAANQESRRQAKAHLQAILNTVGEGIVIADQTGTVVSVNPALLSIFGYERDEVIG 60 Query: 432 S--------SGMRYVHPEDMDKVRAYLQETMEGKKLEPIMFRFLCKDGSYLWTETTLRHI 483 + + ++ M+++ +E+M L + G+ E + Sbjct: 61 NNIDMLIPLAALKAAGSSGMERIFDLGRESMA-----------LRRGGTSFPIELAAGDL 109 Query: 484 SSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQSLNAS 543 + P G+A+ V + R+ISERK+ E + ESE ++ + M + + Sbjct: 110 T--PTGSAQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQ 167 Query: 544 LQQLTGYSYDSLLHASHTEIIDPDELGMAEQRFELAAKGLPQIFESRLIHR---EGYSVE 600 + T + + E+I D+ M + LA + F + H +G Sbjct: 168 FTEHTRALPSHYVGHTRDEMIS-DDTPMEARLQNLADMEARRPFRDFVYHTKNMDGPGRF 226 Query: 601 VSVIYVPIMVNS-QVVGVFSITSNITEH-------KRHLQQIEKLSYEHALILNSVSEGI 652 + V P+ S + G S+ITE K +IE+L+ + IL SV +GI Sbjct: 227 LRVNGKPVFDPSGEFKGYRGTASDITEEIEAADRLKASQAEIERLAERNNSILESVDDGI 286 Query: 653 FGMNLQGETMFINPAASTMLGYEPGELAGNIKLHTVEQRWLDAEPYAGGRWAQPDSLSGQ 712 G++L G F+N AA+ +L +EP EL G+ L + AE DS+ Sbjct: 287 VGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDMETAESLYQILLRLADSI--- 343 Query: 713 LSSEDKEGVFWRQDGSSFLVKYRMSPLFDNGERKGAVVVFRDITEEKAIVR----AKESA 768 D F R+DGS V+Y SP+ D G + G V+ FRDIT+ + + R AKE+A Sbjct: 344 ---RDDTASFKRRDGSPLPVEYIASPVMDKGNQVGVVLGFRDITQRRLVERQLREAKEAA 400 Query: 769 EQADRAKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHILN 828 E +R KSEFLA MSHE+RTPMNG++GM LL T+L EEQ+++ E I S ESLL ++N Sbjct: 401 EAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTKLTEEQRHFAETIRDSGESLLTVIN 460 Query: 829 EVLDFSKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVTDE 888 ++LDFSK+EAG + L+ +L ++ +V+++ P+A KG V +D Sbjct: 461 DILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDP 520 Query: 889 IRLRQILVNLIGNAVKFTEEGEIHVTAGLQSIDETG-DLVIRFTVKDTGIGIPQGSQGLL 947 RLRQ+L+NL GNAVKFTE+G + + L ++ G ++ F V+DTGIGIP +QG L Sbjct: 521 GRLRQVLMNLGGNAVKFTEKGGVSIEVTL--LERPGAQPMVHFDVRDTGIGIPPEAQGRL 578 Query: 948 FQSFSQLHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLSE 1007 F F Q+ S R+YGGTGLGLAI ++L EL+GG +G+ES G+G+ F+ ++ + L + Sbjct: 579 FSMFMQVDASTARRYGGTGLGLAICRRLAELMGGEVGLESQPGKGSRFWMSVPMELLAPQ 638 Query: 1008 PAYQQIPIAGMENGNGKEAPDRTSSEGEYGPLSILVAEDHPVNLQLLQAYLKKRGYYADV 1067 A PD T +LV +D+PVN +++ L+ G Sbjct: 639 SAA---------------PPDLTGHR-------VLVVDDNPVNCDVIERQLRAFGVEVHA 676 Query: 1068 ALN-----GEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIRH--EMGLSPVIVAATAF 1120 L+ GE+ P+++ +D QMP + G E ++R +G S +IV ++ Sbjct: 677 CLDAGSGMGELTRAAAMGTPWEVAVIDSQMPVVTGSEMVRMMRAIPMLGGSRIIVTSSQG 736 Query: 1121 --ARKEDKELCLRAGMQDFISKPI 1142 A ++D + + A F+ KP+ Sbjct: 737 MPAEQQDGQPAIDA----FLHKPL 756 Score = 109 bits (272), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/160 (44%), Positives = 91/160 (56%), Gaps = 12/160 (7%) Query: 998 TIHVFLPLSEPAYQQIPIAGMENGNGKEAPDRTSSEGEYGPLSILVAEDHPVNLQLLQAY 1057 TI L LS P Q P A E N APD T+ L ILVAED+PVN Q+ Sbjct: 764 TIGRVLGLSGPEEQ--PAAPAEEHN---APDSTAKR-----LRILVAEDNPVNQQVALGL 813 Query: 1058 LKKRGYYADVALNGEMAVEMVRSRPYDLVFMDIQMPQMDGIEATSIIRHEMGLSP--VIV 1115 L+K G+ DV +G A+E VR PYD+V MD+QMP+MDG+EAT IR + IV Sbjct: 814 LRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDGLEATRAIRSLASAAARIPIV 873 Query: 1116 AATAFARKEDKELCLRAGMQDFISKPISPAEVDRVLREWS 1155 A TA A + D ++C AGM +ISKPI ++ L ++S Sbjct: 874 AMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAKYS 913 >ref|ZP_00097625.1| COG2202: FOG: PAS/PAC domain [Desulfitobacterium hafniense] Length = 896 Score = 327 bits (839), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 257/798 (32%), Positives = 396/798 (49%), Gaps = 83/798 (10%) Query: 404 ATDNEATYLYASPVCLPMLGYTPEEMEGSSGMRYVHPEDMDKVRAYLQETMEGKKLEPIM 463 ++D Y Y + L G T E+ G + VHPED V L+ + K Sbjct: 17 SSDRAGNYDYVNQAWLEFTGLTFVEVRGEGWLSCVHPEDSPGVMNVLEHSRRHKAPFEAE 76 Query: 464 FRFLCKDGSYLWTETTLRHISSGPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEY 523 +R DG Y + + G A V +I+ERK E+ E+ ++ +F Sbjct: 77 YRLRRYDGEYRHCLSRGQPYDDPKGELAGYTGVIIDITERKAAEIMTRENAEKFREIFNR 136 Query: 524 NPSAISAMDLN-----GHIQSLNASLQQLTGYSYDSLLHASHTEIIDPDELGMAEQRFEL 578 + ++ G IQ +N +L G + ++ S I L +A E Sbjct: 137 ITDCVFIHEVKDDGQIGKIQEVNDMACELIGLTRAEIIDLSREVIKVKSPLTLAN---EF 193 Query: 579 AAKGLPQ---IFESRLIHREGYSVEVSVIYVPIMVNSQVVGVFSITSNITEHKRHLQQIE 635 K L + +FE L+ +G + V V ++N + + + SI +I+ KR + + Sbjct: 194 TQKLLSKNYLVFEGMLLTHQGKEIPVEVKAHYHVLNGRRM-LLSIARDISNQKRIHKILL 252 Query: 636 KLSYEHALILNSVSEGIFGMNLQ-----GETMFINPAASTMLGYEPGELAGNIKLHTVEQ 690 ++ + +++++ +F LQ G + IN A ++GY E+ Sbjct: 253 ASHNKYRQLFDNITDAVFVYELQKDGYPGLLIEINEKARRLMGYH-------------EE 299 Query: 691 RWLDAEPYAGGRWAQPDSLSGQLSSEDK------------EGVFWRQDGSSFLVKYRMSP 738 ++ ++ G +P S QL+ +D EG+ +G V+ Sbjct: 300 TFM----FSAGPCIRPSS--PQLTLDDVWQSLERTHSASFEGICTNLEGEDIPVEVNCHT 353 Query: 739 LFDNGERKGAVVVFRDITEEKAI-----------VRAKESAEQADRAKSEFLAIMSHELR 787 NG K + + RDITE K I +AKE AE A+RAKSEFLA MSHE+R Sbjct: 354 FPLNGS-KVMLTLLRDITERKQIEQERKRTEAEFQQAKEKAEAANRAKSEFLANMSHEIR 412 Query: 788 TPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHILNEVLDFSKIEAGMMTLELQT 847 TP+NGI+GM DL T L++ Q+ +I + SL I+N++LDFSKIEAG +T+E Sbjct: 413 TPINGIIGMIDLTLLTSLEKTQRENLKIAKNCAYSLFKIINDILDFSKIEAGKLTVEEIE 472 Query: 848 VDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVTDEIRLRQILVNLIGNAVKFTE 907 +L +VI +++ P+A KG D R++Q+L NL+ NA+KFTE Sbjct: 473 FNLKEVIEQIIKTHSPEAERKGLDLAYTLSANLPDYYKGDPERIKQVLNNLLSNALKFTE 532 Query: 908 EGEIHVTAG-LQSIDETGDLVIRFTVKDTGIGIPQGSQGLLFQSFSQLHPSINRKYGGTG 966 GE+ + LQ ++ DL +FTV DTGIGI + Q LF+ F+Q+ SI RKYGGTG Sbjct: 533 RGEVSLAVKRLQGDEDVSDL--KFTVMDTGIGIAEEDQLHLFEEFNQVDGSITRKYGGTG 590 Query: 967 LGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLSEPAYQQIPIAGMENGNGKEA 1026 LGLAIS+KLVE++GG I VES +G+G+ F V L L + +N + Sbjct: 591 LGLAISRKLVEMMGGRIWVESEKGKGSSF----GVVLRLKHGDKDTLRFKSTQNND---- 642 Query: 1027 PDRTSSEGEYG-PLSILVAEDHPVNLQLLQAYLKKRGYYADVALNGEMAVEMVRSRPYDL 1085 S EG IL+AEDH VN ++ LK +G+ D+A++GE A+ + PYD+ Sbjct: 643 ---QSREGSTARSYRILLAEDHIVNSIVITEMLKIQGHRVDIAMDGEEALALYHQNPYDV 699 Query: 1086 VFMDIQMPQMDGIEATSIIRHEMGL---SPVIVAATAFARKEDKELCLRAGMQDFISKPI 1142 + MDIQ+P++DGIE T IR G +P I+A TA+A + D+E L+AGM ++I KP+ Sbjct: 700 ILMDIQLPRLDGIEVTKRIRASEGAQSRTP-IIALTAYALQGDREGFLQAGMDEYIPKPV 758 Query: 1143 SPAE----VDRVLREWSA 1156 E +DRV+ ++++ Sbjct: 759 MMEELIMVLDRVVTKFAS 776 >ref|ZP_00043158.1| COG2202: FOG: PAS/PAC domain [Magnetococcus sp. MC-1] Length = 1100 Score = 325 bits (833), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 261/805 (32%), Positives = 390/805 (48%), Gaps = 43/805 (5%) Query: 370 QDITERYRMEEQLRESERNYRLISENSLD-FISRNATDNEATYLYASPVCLPMLGY--TP 426 + I + + E++L+ SE + L S D + + T+ SP L MLGY P Sbjct: 315 RSIAAQQQAEQRLQRSEERFALAMRGSNDGLWDWDIPTDRVTF---SPRWLEMLGYQGAP 371 Query: 427 EEMEGSSGMRYVHPEDMDKVRAYLQETMEGKKLE-PIMFRFLCKDGSYLWTETTLRHISS 485 ++ + ++HP+D +V L + G + +R KDG + + + Sbjct: 372 QDADMRHWQAHIHPDDQPRVEQALGRFLSGDQQHYHSEYRMRHKDGHTIAVLSRAFVLRD 431 Query: 486 GPGGTAEMVCVTRNISERKQYELKQLESENLYKSLFEYNPSAISAMDLNGHIQSLNASLQ 545 G MV +I+ K+ + ESE +++ FE + + L+ H N + Sbjct: 432 ATGRAIRMVGTHADITALKEQARRLRESETRFRAYFEQSVVGMVMASLDRHFIDANHAFC 491 Query: 546 QLTGYSYDSLLHASHTEIIDPDELGMAEQRFELAAKGLPQIFE--SRLIHREGYSVE--V 601 + GYS LL + +I PD+L +FE G FE R +HR+G+ V + Sbjct: 492 HMLGYSRGELLKMNFPQITYPDDLERDLVQFEQLRSGQVSAFEMEKRYLHRDGHPVWGLL 551 Query: 602 SVIYVPIMVNSQVVGVFSITSNITEHKRHLQQIEKLSYEHALILNSVSEGIFGM---NLQ 658 S V + Q + + NI K+ L+Q+ + +++ G+ GM Q Sbjct: 552 SATTVKDELG-QASYLIAQVQNIDTQKKALEQLRQ---SESMMRGYFELGLIGMATTTAQ 607 Query: 659 GETMFINPAASTMLGYEPGELAGNIKLHTVEQRWLDAEPYAGGRWAQPDSLSGQLSSEDK 718 + IN +LGY L + A+ A R + LS + E + Sbjct: 608 HGWVQINQRLCEILGYPEMALRQKSWAEITHPQDRQADEVAIERLRK--GLSEGYALEKR 665 Query: 719 EGVFWRQDGSSFLVKYRMSPLFDNGERKGA-VVVFRDITEEK----AIVRAKESAEQADR 773 F RQDG+ L G G + + +DIT K A+ KE AE A+R Sbjct: 666 ---FIRQDGAFIYASISAGCLRKEGGEIGHFLTLVQDITARKRMELALQEQKEQAEAANR 722 Query: 774 AKSEFLAIMSHELRTPMNGIMGMADLLAGTELDEEQQYYTEIINKSSESLLHILNEVLDF 833 AKS FLA+MSHE+RTPMN I+GMA+LL ++L Q + E +N+S ESLL ++N++LD Sbjct: 723 AKSTFLAVMSHEIRTPMNAILGMAELLRESDLTSRQHWCVETLNRSGESLLSLINDILDL 782 Query: 834 SKIEAGMMTLELQTVDLSQVIRNVMELFYPKALEKGXXXXXXXXXXXXXXVVTDEIRLRQ 893 SKIEA +TLE DL Q++ +V LF +A KG VV D IRLRQ Sbjct: 783 SKIEAERLTLEHVVFDLVQLVGDVCSLFGYEAQSKGLALKHHIAPTLPRYVVGDPIRLRQ 842 Query: 894 ILVNLIGNAVKFTEEGEIHVTAGLQSIDETGDLVIRFTVKDTGIGIPQGSQGLLFQSFSQ 953 I++NL+GNAVKFT++G + V ++ D + F ++DTGIG+ Q +F+ F+Q Sbjct: 843 IMMNLVGNAVKFTKQGHVSV-----ELNPLADGRLSFVIRDTGIGVSVEQQRNIFKPFTQ 897 Query: 954 LHPSINRKYGGTGLGLAISKKLVELLGGMIGVESNEGEGAEFFFTIHVFLPLSEPAYQQI 1013 SI R++GGTGLGL I +LV L+GG + +ES GEG+ F F + LP + P + + Sbjct: 898 ADSSITREHGGTGLGLTICMRLVALMGGEMQLESTLGEGSCFHFELE--LPAAPPGAESV 955 Query: 1014 PIAGMENGNGKEAPDRTSSEGEYGPLSILVAEDHPVNLQLLQAYLKKRGYYADVALNGEM 1073 + A S+ P ILV +D N L+ +LKK Y +A NG Sbjct: 956 VGTPRTLADVASALRLESAAHHNDP--ILVVDDAEDNRMLVNVFLKKTRYTLVMAENGLE 1013 Query: 1074 AVEMVRSRPYDLVFMDIQMPQMDGIEATSIIRH-----EMGLSPVIVAATAFARKEDKEL 1128 AV + +P+ LV MDIQMP MDG EAT IR G +P I+A TA A E+ + Sbjct: 1014 AVNAFKQQPFALVLMDIQMPLMDGYEATRQIRQWEQQKGSGRTP-IIALTAHALSEESQQ 1072 Query: 1129 CLRAGMQDFISKPISPAEVDRVLRE 1153 L AG ++KPI +++ VL E Sbjct: 1073 ILEAGCDIHLTKPIRKSKLLEVLAE 1097 Score = 87.4 bits (215), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/433 (22%), Positives = 186/433 (42%), Gaps = 34/433 (7%) Query: 220 LWLENSFQVMRNSKGGVEKVLTIAR-------DITERKKYENLLATAQEL-------GNI 265 W+ ++ V GG+ +V IAR I +++ E L ++E N Sbjct: 284 FWIMSALLVAVLVVGGLYRVFAIARYNRELQRSIAAQQQAEQRLQRSEERFALAMRGSND 343 Query: 266 GSWEWDSLNERMTVSKQLRSIFDLCQDSGTATHSQIDYVQLLARVVPEDMAPLQAELSKT 325 G W+WD +R+T S + ++ G + + + Q A + P+D ++ L + Sbjct: 344 GLWDWDIPTDRVTFSPRW---LEMLGYQGAPQDADMRHWQ--AHIHPDDQPRVEQALGRF 398 Query: 326 LKSGVNG-QSVFRIENDKGERKFIYTHWEVVLDTAGKTLQINGIVQDITERYRMEEQLRE 384 L S +R+ + G + + V+ D G+ +++ G DIT +LRE Sbjct: 399 LSGDQQHYHSEYRMRHKDGHTIAVLSRAFVLRDATGRAIRMVGTHADITALKEQARRLRE 458 Query: 385 SERNYRLISENSLDFISRNATDNEATYLYASPVCLPMLGYTPEEMEGSSGMRYVHPEDMD 444 SE +R E S+ + + D ++ A+ MLGY+ E+ + + +P+D++ Sbjct: 459 SETRFRAYFEQSVVGMVMASLDRH--FIDANHAFCHMLGYSRGELLKMNFPQITYPDDLE 516 Query: 445 KVRAYLQETMEGK----KLEPIMFRFLCKDGSYLWTETTLRHISSGPGGTAEMVCVTRNI 500 + ++ G+ ++E R+L +DG +W + + G + ++ +NI Sbjct: 517 RDLVQFEQLRSGQVSAFEMEK---RYLHRDGHPVWGLLSATTVKDELGQASYLIAQVQNI 573 Query: 501 SERKQYELKQL-ESENLYKSLFEYNPSAISAMDLNGHIQSLNASLQQLTGYSYDSLLHAS 559 +K+ L+QL +SE++ + FE ++ +N L ++ GY +L S Sbjct: 574 DTQKK-ALEQLRQSESMMRGYFELGLIGMATTTAQHGWVQINQRLCEILGYPEMALRQKS 632 Query: 560 HTEIIDPDELGMAEQRFELAAKGLPQ--IFESRLIHREGYSVEVSVIYVPIMVNSQVVGV 617 EI P + E E KGL + E R I ++G + S+ + +G Sbjct: 633 WAEITHPQDRQADEVAIERLRKGLSEGYALEKRFIRQDGAFIYASISAGCLRKEGGEIGH 692 Query: 618 F-SITSNITEHKR 629 F ++ +IT KR Sbjct: 693 FLTLVQDITARKR 705 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/268 (26%), Positives = 126/268 (47%), Gaps = 19/268 (7%) Query: 2 TETLFKHLYLRSSIGFAVVSTKDGTMIMANPALCSMFGYTEEEMMKLRYLXXXXIALPED 61 +ET F+ + +S +G V+++ D I AN A C M GY+ E++K+ + I P+D Sbjct: 459 SETRFRAYFEQSVVGM-VMASLDRHFIDANHAFCHMLGYSRGELLKMNF---PQITYPDD 514 Query: 62 EPTADHELIMKYLLQSPG-AAVDKEKRFVRKDGSIIWIALHIFLTFDEATGAPVHLIAEM 120 + +L+ L+S +A + EKR++ +DG +W L DE G +LIA++ Sbjct: 515 ---LERDLVQFEQLRSGQVSAFEMEKRYLHRDGHPVWGLLSATTVKDE-LGQASYLIAQV 570 Query: 121 TEI-TSRKLAENKIEEDRLLYNLITQNTPDMISFADADGTVRYVSPSVEKLLGYSMDEVI 179 I T +K E + + ++ M + G V+ ++ + ++LGY + Sbjct: 571 QNIDTQKKALEQLRQSESMMRGYFELGLIGMATTTAQHGWVQ-INQRLCEILGYPEMALR 629 Query: 180 GRKRPDFYHEED------AIEMKQHGKMYSDSDVFTQRARHRDGHYLWLENSFQVMRNSK 233 + + H +D AIE + G S+ +R +DG +++ S +R Sbjct: 630 QKSWAEITHPQDRQADEVAIERLRKG--LSEGYALEKRFIRQDGAFIYASISAGCLRKEG 687 Query: 234 GGVEKVLTIARDITERKKYENLLATAQE 261 G + LT+ +DIT RK+ E L +E Sbjct: 688 GEIGHFLTLVQDITARKRMELALQEQKE 715 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,658,924,365 Number of extensions: 69763747 Number of successful extensions: 219695 Number of sequences better than 1.0e-05: 6235 Number of HSP's gapped: 209908 Number of HSP's successfully gapped: 7325 Length of query: 1160 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1023 Effective length of database: 385,269,015 Effective search space: 394130202345 Effective search space used: 394130202345 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)