BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0028.p
         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_799476.1| BH1518-unknown conserved protein [Bacillus mega...    88   5e-17
ref|NP_831481.1| hypothetical Membrane Spanning Protein [Bacillu...    84   1e-15
ref|NP_799473.1| hypothetical protein [Bacillus megaterium] >gi|...    83   2e-15
ref|NP_978154.1| membrane protein, putative [Bacillus cereus ATC...    80   2e-14
ref|NP_655633.1| hypothetical protein predicted by GeneMark [Bac...    79   3e-14

>ref|NP_799476.1| BH1518-unknown conserved protein [Bacillus megaterium]
 gb|AAO52801.1| BH1518-unknown conserved protein [Bacillus megaterium]
          Length = 328

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 54/70 (77%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG +YVLSLCS +DAFVAS+F HTF   +LLAF++ GPM+DFKN++MLLS F  RFA  
Sbjct: 248 MMGFAYVLSLCSEADAFVASSFSHTFSPTALLAFLLYGPMMDFKNTIMLLSFFNKRFAFS 307

Query: 61  LFFLIISAVF 70
           L F+I   V+
Sbjct: 308 LIFIITVIVY 317


>ref|NP_831481.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
 gb|AAP08682.1| hypothetical Membrane Spanning Protein [Bacillus cereus ATCC 14579]
          Length = 281

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 54/71 (76%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG  YVLS+CS +DAF+A++F H F   +LLAF+V GPMLD KN+LML + F+ RF  +
Sbjct: 204 MMGFGYVLSICSAADAFIAASFGHVFSVKALLAFLVFGPMLDMKNTLMLFAYFQKRFVFF 263

Query: 61  LFFLIISAVFT 71
           L  ++I++V+T
Sbjct: 264 LIGIVIASVYT 274


>ref|NP_799473.1| hypothetical protein [Bacillus megaterium]
 gb|AAO52766.1| hypothetical protein [Bacillus megaterium]
          Length = 289

 Score = 83.2 bits (204), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 50/62 (80%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMGLSY+LSLCS++DAF+AS+F  TF   +++AF+V GPM D KN+LM+LS FKT+F   
Sbjct: 212 MMGLSYILSLCSSADAFIASSFRSTFNDSAIIAFLVFGPMFDIKNTLMMLSQFKTKFVFS 271

Query: 61  LF 62
           LF
Sbjct: 272 LF 273


>ref|NP_978154.1| membrane protein, putative [Bacillus cereus ATCC 10987]
 gb|AAS40762.1| membrane protein, putative [Bacillus cereus ATCC 10987]
          Length = 371

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 52/71 (73%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG  YVLS+CS +D+F+A++F H F   +LLAF+V GPMLD KN+ ML + F+ RF  +
Sbjct: 294 MMGFGYVLSICSAADSFIAASFGHVFSVKALLAFLVFGPMLDMKNTFMLFAYFQKRFVFF 353

Query: 61  LFFLIISAVFT 71
           L  +II +V+T
Sbjct: 354 LIGIIILSVYT 364


>ref|NP_655633.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
           A2012]
 ref|NP_844191.1| membrane protein, putative [Bacillus anthracis str. Ames]
 gb|AAP25677.1| membrane protein, putative [Bacillus anthracis str. Ames]
          Length = 325

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 53/71 (74%)

Query: 1   MMGLSYVLSLCSTSDAFVASTFLHTFPSGSLLAFMVLGPMLDFKNSLMLLSLFKTRFALY 60
           MMG  YVLS+CS++DAF+A++F   F   +LLAF+V GPMLD KN+LML + F+ +F  +
Sbjct: 248 MMGFGYVLSICSSADAFIAASFGQVFSVKALLAFLVFGPMLDMKNTLMLFAYFQKKFVFF 307

Query: 61  LFFLIISAVFT 71
           L  +II +V+T
Sbjct: 308 LIGIIILSVYT 318


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.335    0.143    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 94,460,789
Number of extensions: 2787536
Number of successful extensions: 14256
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 14264
Number of HSP's successfully gapped: 35
Length of query: 80
Length of database: 757,237,578
Length adjustment: 50
Effective length of query: 30
Effective length of database: 621,482,628
Effective search space: 18644478840
Effective search space used: 18644478840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 120 (50.8 bits)