BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0022.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388168.1| similar to ABC transporter (ATP-binding protein... 274 1e-72 ref|NP_469537.1| similar to high-affinity zinc ABC transporter (... 234 1e-60 ref|NP_813866.1| ABC transporter, ATP-binding protein [Enterococ... 229 4e-59 ref|NP_463687.1| similar to high-affinity zinc ABC transporter (... 228 7e-59 ref|NP_268490.1| ABC transporter (ATP-binding protein) [Streptoc... 221 1e-56 >ref|NP_388168.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||B69756 ABC transporter (ATP-binding protein) homolog ycdI - Bacillus subtilis dbj|BAA22247.1| YcdI [Bacillus subtilis] emb|CAB12080.1| ycdI [Bacillus subtilis subsp. subtilis str. 168] Length = 231 Score = 274 bits (701), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 125/226 (55%), Positives = 161/226 (71%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 +KD+VFGY PV+D +SL+IE+G+F+GITGPN +PW GTVT++K Sbjct: 6 LKDIVFGYSHTPVLDKVSLDIESGEFVGITGPNGASKSTLIKVMLGMLKPWEGTVTISKR 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 TEG++L IGYVPQQ++SFNAGFPS V+ELV+SG Y + WF R +E VE++L+ V Sbjct: 66 NTEGKRLTIGYVPQQISSFNAGFPSTVLELVQSGRYTKGKWFKRLNEEDHLEVEKALKMV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+ R+R+IG+LSGGQKQ+ICIAR LA P +L+LDEP T +D SR GFY+ M H V Sbjct: 126 EMWDLRHRKIGDLSGGQKQKICIARMLASNPDLLMLDEPTTAVDYDSRKGFYEFMHHLVK 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSCSAHF 226 NH RTV+MVTH E + +LD VI LER E+ GWKCL NSC F Sbjct: 186 NHNRTVVMVTHEQNEVQQFLDKVIRLERGEKGGWKCLTWNSCDELF 231 >ref|NP_469537.1| similar to high-affinity zinc ABC transporter (ATP-binding protein) [Listeria innocua] pir||AI1456 high-affinity zinc ABC transporter (ATP-binding protein) homolog lin0192 [imported] - Listeria innocua (strain Clip11262) emb|CAC95425.1| lin0192 [Listeria innocua] Length = 234 Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 148/222 (66%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 + ++ F Y SEPV++N+S ++ AG+FI +TG N +P G+VT +K+ Sbjct: 6 IANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFSKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 T+G +L +GYVPQQ+ASFNAGFPS V+ELVRSG +P WF R T++ VE++L+ V Sbjct: 66 NTDGGRLLVGYVPQQIASFNAGFPSTVLELVRSGRFPNGKWFKRLTEKDHAHVEKALKSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+YR++RIGELSGGQKQRIC+AR A P +L+LDEP T MD S+ FY L++H Sbjct: 126 EMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYDLLKHEAQ 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSC 222 HG+ ++MVTH EE Y+D I L R+E WKC + C Sbjct: 186 VHGKAILMVTHDSEEMEDYVDKHIRLVRKEDVSWKCFSMDLC 227 >ref|NP_813866.1| ABC transporter, ATP-binding protein [Enterococcus faecalis V583] gb|AAO79938.1| ABC transporter, ATP-binding protein [Enterococcus faecalis V583] Length = 230 Score = 229 bits (583), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 103/217 (47%), Positives = 147/217 (67%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 ++++ F Y EPV++++S ++ G+F+ +TG N +P SG +T+ K+ Sbjct: 6 VENLTFYYDDEPVLEDVSYYVDPGEFVILTGENGAAKSTLIKSTLGLLKPTSGKITVAKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 + GEK++IGY+PQQVASFNAGFPS VIELVRSG +PR WF TK+ VE++L+ V Sbjct: 66 NSAGEKISIGYIPQQVASFNAGFPSTVIELVRSGRFPRNRWFKPLTKKDHLHVEKALKSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 DMWE R++RIGELSGGQKQRI +AR A P + +LDEP TGMD SR+ FY+L++H Sbjct: 126 DMWEMRHKRIGELSGGQKQRISLARVFATDPDLFILDEPTTGMDEQSRNEFYQLLQHSAH 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCL 217 HG+ ++M+TH E+ + Y+D I L R+E W+C Sbjct: 186 EHGKAILMITHDHEDIKTYVDRQIRLVRKEDSKWRCF 222 >ref|NP_463687.1| similar to high-affinity zinc ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AC1094 high-affinity zinc ABC transporter (ATP-binding protein) homolog lmo0154 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98369.1| lmo0154 [Listeria monocytogenes] Length = 234 Score = 228 bits (582), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 105/222 (47%), Positives = 144/222 (64%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 + ++ F Y SEPV++N+S ++ AG+FI +TG N +P G+VT K+ Sbjct: 6 IANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKSTLLRIILGILQPDKGSVTFAKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 +G +L GYVPQQ+ASFNAGFPS V+ELVRSG +P WF R T + VE++L+ V Sbjct: 66 NADGGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFPNGKWFKRLTTKDHAHVEKALKSV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 +MW+YR++RIGELSGGQKQRIC+AR A P +L+LDEP T MD S+ FY L++H Sbjct: 126 EMWDYRHKRIGELSGGQKQRICLARMFATDPDILILDEPQTAMDKQSKIRFYNLLKHEAQ 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCLVTNSC 222 HG+ ++MVTH EE ++D I L R+E WKC + C Sbjct: 186 VHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVSWKCFSMDLC 227 >ref|NP_268490.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes] gb|AAK33211.1| ABC transporter (ATP-binding protein) [Streptococcus pyogenes M1 GAS] Length = 239 Score = 221 bits (562), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 102/217 (47%), Positives = 139/217 (64%) Query: 1 MKDVVFGYGSEPVIDNLSLEIEAGQFIGITGPNXXXXXXXXXXXXXXXRPWSGTVTLNKE 60 +K++ F Y SEPV++ ++ +++G+F+ +TG N +P +G VT+ K+ Sbjct: 6 VKNLSFQYESEPVLEGITYHLDSGEFVTMTGENGAAKSTLIKATLGILQPKAGRVTIAKK 65 Query: 61 ITEGEKLAIGYVPQQVASFNAGFPSKVIELVRSGCYPRLGWFGRFTKEQEELVERSLRQV 120 +G++L I Y+PQQVASFNAGFPS V E V+SG YPR GWF K EE V+ SL V Sbjct: 66 NKDGKQLRIAYLPQQVASFNAGFPSTVYEFVKSGRYPRSGWFRHLNKHDEEHVQASLEAV 125 Query: 121 DMWEYRNRRIGELSGGQKQRICIARALAQQPQVLVLDEPATGMDIGSRSGFYKLMRHYVS 180 MWE R++RIG LSGGQKQR+ IAR A P + VLDEP TGMD G+ FY+LM H Sbjct: 126 GMWENRHKRIGSLSGGQKQRVVIARMFASDPDIFVLDEPTTGMDSGTTDTFYELMHHSAH 185 Query: 181 NHGRTVIMVTHGLEETRPYLDTVISLEREEQEGWKCL 217 HG++V+M+TH EE + Y D I L R ++ W+C Sbjct: 186 QHGKSVLMITHDPEEVKAYADRNIHLVRNQKLPWRCF 222 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 322,171,735 Number of extensions: 11496022 Number of successful extensions: 67632 Number of sequences better than 1.0e-05: 13274 Number of HSP's gapped: 62328 Number of HSP's successfully gapped: 13779 Length of query: 230 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 109 Effective length of database: 428,710,599 Effective search space: 46729455291 Effective search space used: 46729455291 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)