BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0021.p (255 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00036334.1| COG1108: ABC-type Mn2+/Zn2+ transport systems... 219 6e-56 ref|NP_813867.1| ABC transporter, permease protein [Enterococcus... 214 2e-54 ref|NP_463688.1| similar to high-affinity zinc ABC transporter (... 199 4e-50 ref|NP_469538.1| similar to high-affinity zinc ABC transporter (... 198 8e-50 ref|NP_388169.1| similar to hypothetical proteins [Bacillus subt... 187 1e-46 >ref|ZP_00036334.1| COG1108: ABC-type Mn2+/Zn2+ transport systems, permease components [Enterococcus faecium] Length = 274 Score = 219 bits (557), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 116/248 (46%), Positives = 170/248 (68%), Gaps = 4/248 (1%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVALG L L+P L+ V + +++E LR YRTYSE Sbjct: 28 VFLVIRRQSLMADTLSHVSLAGVALGFFLNLNPTLTTMLVVVLAAVILEYLRTIYRTYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQ-NLSRSFSSYLFGSIVAVSDTQLGLIAIV-AAVGLSYF 118 + +AI+M GLALA+VLM+L N + S SYLFGSIV ++ Q+ + I+ A+G+ +F Sbjct: 88 ISIAILMAGGLALALVLMNLSGGNSATSIQSYLFGSIVTITWEQVIFLGILFVAIGILFF 147 Query: 119 ILLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPAS 178 L +RP+Y LTFDE+TA + G+ L+S F V+TG+ +A +P+ G LL+SA+MVLPA+ Sbjct: 148 -LFKRPMYVLTFDEDTAHVDGLPVHLMSMMFNVITGVAIAVMIPIAGALLISAIMVLPAA 206 Query: 179 IALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGTXXXXXXXXXXXXXXVQKLL 238 I +R+ F+ I IS+ VG G+ SGLT+S+Y++TPPG T ++++L Sbjct: 207 IGMRLGKSFNVVIAISVCVGFLGMLSGLTSSFYLDTPPGATITLVFIALFLIVNIIKRIL 266 Query: 239 -AFQKRRS 245 AF+++ + Sbjct: 267 VAFRRKNN 274 >ref|NP_813867.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO79939.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 279 Score = 214 bits (544), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 109/220 (49%), Positives = 156/220 (70%), Gaps = 1/220 (0%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVALG +P L V I +++E LR Y TYSE Sbjct: 29 VFLVIRRQSLMADTLSHVSLAGVALGFFFNWNPNLMTLIVVIVAAIILEYLRMIYSTYSE 88 Query: 61 LPVAIIMTSGLALAVVLMSLKQ-NLSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFI 119 + +AI+M+ GLALA+VLM+L N + S SYLFGSIV ++ Q+ ++AI+ V + F+ Sbjct: 89 ISIAILMSGGLALALVLMNLTGGNSAASIQSYLFGSIVTITWDQVVMLAILFVVLVLLFM 148 Query: 120 LLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASI 179 L +RP+Y LTFDE+TA + G+ +S F V+TG+ +A +P+ G LL+SA+MVLPA+I Sbjct: 149 LFKRPMYVLTFDEDTAHVDGLPIHWMSMLFNVITGVAIAVMIPIAGALLISAIMVLPAAI 208 Query: 180 ALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGT 219 +R+ GF+ I+IS+ +GL G+ +GLT+SYY+ TPP + Sbjct: 209 GMRIGKGFNTVIIISVFMGLIGMLTGLTSSYYLETPPSAS 248 >ref|NP_463688.1| similar to high-affinity zinc ABC transporter (membrane protein) [Listeria monocytogenes EGD-e] pir||AD1094 high-affinity zinc ABC transporter (membrane protein) homolog lmo0155 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98370.1| lmo0155 [Listeria monocytogenes] Length = 268 Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 153/220 (69%), Gaps = 1/220 (0%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVA G VL ++P+++ V + L IE LR Y TYSE Sbjct: 28 VFLIIRRQSLMADTLSHVSLAGVAFGLVLNVNPSVTTLIVVVIAALGIEYLRGVYVTYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQN-LSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFI 119 L +AI+M GLA+A+VLMSL Q ++ S YLFGSIV +S Q+ L+ I+ + F+ Sbjct: 88 LSIAILMAGGLAVALVLMSLDQGGITTSVQQYLFGSIVTISKAQVQLLVILGVAIVVLFL 147 Query: 120 LLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASI 179 + +R ++ LTF E+ A GV L+S F+V+TG+ +A MP+ G LLVSAL++LPA+I Sbjct: 148 VFKRFMFVLTFSEDVAVAEGVPVRLISLLFSVVTGIAIAVIMPIAGALLVSALIILPAAI 207 Query: 180 ALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGT 219 +R++ GF ++ +I +GL G+FSGL +SY + TPPG T Sbjct: 208 GMRISKGFLMCVISAILIGLVGMFSGLVSSYQLGTPPGAT 247 >ref|NP_469538.1| similar to high-affinity zinc ABC transporter (membrane protein) [Listeria innocua] pir||AB1457 high-affinity zinc ABC transporter (membrane protein) homolog lin0193 [imported] - Listeria innocua (strain Clip11262) emb|CAC95426.1| lin0193 [Listeria innocua] Length = 268 Score = 198 bits (504), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 153/220 (69%), Gaps = 1/220 (0%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 V+L++RRQ LMADTLSHVSLAGVA G VL ++P+++ V + L IE LR Y TYSE Sbjct: 28 VFLIIRRQSLMADTLSHVSLAGVAFGLVLNVNPSVTTLIVVVIAALGIEYLRGVYATYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSLKQN-LSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFI 119 L +AI+M GLA+A+VLMSL Q ++ S YLFGSIV +S Q+ L+ I+ + F+ Sbjct: 88 LSIAILMAGGLAVALVLMSLDQGGITTSVQQYLFGSIVTISKAQVQLLVILGIAIVVLFL 147 Query: 120 LLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASI 179 + +R ++ LTF E+ A GV L+S F+V+TG+ +A MP+ G LLVSAL++LPA+I Sbjct: 148 VFKRFMFVLTFSEDVAVAEGVPVRLISLLFSVVTGIAIAVIMPIAGALLVSALIILPAAI 207 Query: 180 ALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGT 219 +R++ GF ++ +I +GL G+FSGL +SY + TPPG T Sbjct: 208 GMRISKGFLMCVVSAILIGLIGMFSGLVSSYQLGTPPGAT 247 >ref|NP_388169.1| similar to hypothetical proteins [Bacillus subtilis] pir||C69756 conserved hypothetical protein yceA - Bacillus subtilis dbj|BAA22248.1| YceA [Bacillus subtilis] emb|CAB12081.1| yceA [Bacillus subtilis subsp. subtilis str. 168] Length = 280 Score = 187 bits (476), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 168/250 (67%), Gaps = 1/250 (0%) Query: 1 VYLMLRRQVLMADTLSHVSLAGVALGSVLQLSPALSGFAVAIAGGLVIEQLRRSYRTYSE 60 VYL+LRRQ LMADTLSH+SL+GVA+G L + + V G + IE +RR+YRTYSE Sbjct: 28 VYLVLRRQALMADTLSHISLSGVAIGFFLSTNITAASIVVVTIGAIGIEYMRRAYRTYSE 87 Query: 61 LPVAIIMTSGLALAVVLMSL-KQNLSRSFSSYLFGSIVAVSDTQLGLIAIVAAVGLSYFI 119 + +AI+M +GL+ A+ L+SL K + S YLFGS+V V+ Q+ +I+I+ + L YFI Sbjct: 88 VSIAILMAAGLSFAMFLISLSKGTANMSIDQYLFGSLVTVNQQQVYIISIITLLILLYFI 147 Query: 120 LLRRPLYSLTFDEETASIGGVRTGLLSFSFAVLTGMTVAAAMPVVGVLLVSALMVLPASI 179 +LRRPLY LTFDE TA G+ T +LS SF+++TG+ ++ +P++GVLLVSAL+VLPA+ Sbjct: 148 VLRRPLYLLTFDEATAKTSGINTNVLSLSFSIVTGLAISVIIPIIGVLLVSALLVLPAAF 207 Query: 180 ALRVASGFSAAILISIGVGLTGVFSGLTASYYINTPPGGTXXXXXXXXXXXXXXVQKLLA 239 A+R+A GF+ + +I + L VF+GLT+SY + TPPG + VQ + Sbjct: 208 AIRIAKGFNMVFITAILISLFSVFTGLTSSYQLGTPPGPSITLLLIVLLLIGFAVQGVWT 267 Query: 240 FQKRRSVRKS 249 F K+ + RK Sbjct: 268 FIKKEAQRKK 277 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.137 0.366 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 290,265,499 Number of extensions: 10284691 Number of successful extensions: 56651 Number of sequences better than 1.0e-05: 526 Number of HSP's gapped: 56358 Number of HSP's successfully gapped: 527 Length of query: 255 Length of database: 757,237,578 Length adjustment: 123 Effective length of query: 132 Effective length of database: 423,280,401 Effective search space: 55873012932 Effective search space used: 55873012932 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 124 (52.4 bits)