BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0019.p
         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_694354.1| 30S ribosomal protein S14 [Oceanobacillus iheye...    64   1e-09
ref|NP_388768.1| similar to ribosomal protein S14 [Bacillus subt...    64   1e-09
ref|NP_764573.1| 30S ribosomal protein S14 [Staphylococcus epide...    62   4e-09
ref|NP_371860.1| 30S ribosomal protein S14 homolog [Staphylococc...    60   1e-08
ref|ZP_00182612.1| hypothetical protein Exigu205301 [Exiguobacte...    58   6e-08

>ref|NP_694354.1| 30S ribosomal protein S14 [Oceanobacillus iheyensis HTE831]
 dbj|BAC15388.1| 30S ribosomal protein S14 [Oceanobacillus iheyensis HTE831]
          Length = 89

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 42/52 (80%), Gaps = 2/52 (3%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDSXXXPAKRTG 52
          MAKKSKI KE KRQ++V ++A+ RRELKAKGDY A++KLPRDS   P + TG
Sbjct: 1  MAKKSKIAKERKRQQMVEKYAELRRELKAKGDYEAIRKLPRDS--SPTRLTG 50


>ref|NP_388768.1| similar to ribosomal protein S14 [Bacillus subtilis]
 sp|O31587|R14B_BACSU 30S ribosomal protein S14-2
 pir||F69835 ribosomal protein S14 homolog yhzA - Bacillus subtilis
 emb|CAB12716.1| yhzA [Bacillus subtilis subsp. subtilis str. 168]
          Length = 89

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSK+ KELKRQ+LV ++A  RRELK KGDY AL KLPRDS
Sbjct: 1  MAKKSKVAKELKRQQLVEQYAGIRRELKEKGDYEALSKLPRDS 43


>ref|NP_764573.1| 30S ribosomal protein S14 [Staphylococcus epidermidis ATCC 12228]
 gb|AAO04615.1| 30S ribosomal protein S14 [Staphylococcus epidermidis ATCC 12228]
          Length = 89

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSKI KE KRQELV ++ + R+ELKAKGDY AL+KLPRDS
Sbjct: 1  MAKKSKIAKEQKRQELVNKYYELRKELKAKGDYEALRKLPRDS 43


>ref|NP_371860.1| 30S ribosomal protein S14 homolog [Staphylococcus aureus subsp.
          aureus Mu50]
 ref|NP_374450.1| rpsN [Staphylococcus aureus subsp. aureus N315]
 ref|NP_646040.1| 30S ribosomal protein S14 homolog~ORFID:MW1223 [Staphylococcus
          aureus subsp. aureus MW2]
 sp|Q99UE0|R14B_STAAM 30S ribosomal protein S14-2
 pir||A89909 hypothetical protein rpsN [imported] - Staphylococcus aureus
          (strain N315)
 dbj|BAB42429.1| rpsN [Staphylococcus aureus subsp. aureus N315]
 dbj|BAB57498.1| 30S ribosomal protein S14 homolog [Staphylococcus aureus subsp.
          aureus Mu50]
 dbj|BAB95088.1| rpsN [Staphylococcus aureus subsp. aureus MW2]
          Length = 89

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKSKI KE KR+ELV ++ + R+ELKAKGDY AL+KLPRDS
Sbjct: 1  MAKKSKIAKERKREELVNKYYELRKELKAKGDYEALRKLPRDS 43


>ref|ZP_00182612.1| hypothetical protein Exigu205301 [Exiguobacterium sp. 255-15]
          Length = 89

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 35/43 (81%)

Query: 1  MAKKSKIVKELKRQELVAEFADKRRELKAKGDYMALQKLPRDS 43
          MAKKS I +E+KRQ LV  +A++R ELKA+GDY+ L KLPR+S
Sbjct: 1  MAKKSMIAREVKRQALVERYAEQRAELKAQGDYIGLSKLPRNS 43


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.314    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 73,564,960
Number of extensions: 1934450
Number of successful extensions: 5944
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 5951
Number of HSP's successfully gapped: 14
Length of query: 62
Length of database: 757,237,578
Length adjustment: 34
Effective length of query: 28
Effective length of database: 664,924,212
Effective search space: 18617877936
Effective search space used: 18617877936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)