BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0291.0018.p
         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00118115.1| hypothetical protein [Cytophaga hutchinsonii]      103   1e-21
ref|NP_774498.1| bll7858 [Bradyrhizobium japonicum] >gi|27356142...    98   5e-20

>ref|ZP_00118115.1| hypothetical protein [Cytophaga hutchinsonii]
          Length = 142

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 11  SYTDTFIRVAVDCPAETGVVPVSARPHPPVHVIQYELLSGAPYAYTHEELLYEVHVRHKG 70
           +Y+DTFI VA DC    G VP        +   Q+E+LS  PY YT +++L++V+     
Sbjct: 11  NYSDTFIEVADDCSVSEGKVPEVKNDKKTIAFRQFEMLSKNPYKYTSDDVLFQVYADKND 70

Query: 71  ISEQERAERRKEIWTALFSKSHPCLRASMLPKKYGWGIHYNSEGKIAIYGKESPEYDHYT 130
           + + E    RK    A FSK   C RAS L K++G+G+H + +GKIA+YG E+ EY  + 
Sbjct: 71  LIKSEYEAARK----AFFSKGQACFRASPLTKQFGFGVHADKKGKIALYGMETEEYQKFV 126

Query: 131 SGSADGVKLLNAMRNKK 147
                 +K + AMR  K
Sbjct: 127 RDP--DIKKVKAMRTSK 141


>ref|NP_774498.1| bll7858 [Bradyrhizobium japonicum]
 dbj|BAC53123.1| bll7858 [Bradyrhizobium japonicum USDA 110]
          Length = 142

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 76/134 (56%), Gaps = 2/134 (1%)

Query: 14  DTFIRVAVDCPAETGVVPVSARPHPPVHVIQYELLSGAPYAYTHEELLYEVHVRHKGISE 73
           +TFIRVA DCPA TG  P      P V  +QYE+++ APY +T +++++      + +  
Sbjct: 10  NTFIRVAEDCPAHTGEEPPLRAGKPTVASLQYEMIAKAPYKHTSDDVIFATSAPGRELDV 69

Query: 74  QERAERRKEIWTALFSKSHPCLRASMLPKKYGWGIHYNSEGKIAIYGKESPEYDHYTSGS 133
           +     ++    A FS+   C+RAS L K++GWG+H +SEG+IAIY  +S  Y       
Sbjct: 70  KATKTEKRAAREAFFSRGQACMRASSLGKRFGWGVHADSEGRIAIYAVDSKRYQALVRDP 129

Query: 134 ADGVKLLNAMRNKK 147
              +  + AMR+K+
Sbjct: 130 K--LTQVRAMRSKR 141


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.316    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 233,283,235
Number of extensions: 9121481
Number of successful extensions: 18432
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 18431
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 757,237,578
Length adjustment: 107
Effective length of query: 40
Effective length of database: 466,721,985
Effective search space: 18668879400
Effective search space used: 18668879400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)