BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0016.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656459.1| Ubie_methyltran, ubiE/COQ5 methyltransferase fa... 121 9e-27 ref|NP_832291.1| Methyltransferase [Bacillus cereus ATCC 14579] ... 118 8e-26 ref|NP_978915.1| conserved hypothetical protein [Bacillus cereus... 116 4e-25 ref|NP_691708.1| hypothetical protein OB0787 [Oceanobacillus ihe... 106 3e-22 gb|EAI90530.1| unknown [environmental sequence] 63 5e-09 >ref|NP_656459.1| Ubie_methyltran, ubiE/COQ5 methyltransferase family [Bacillus anthracis A2012] ref|NP_844957.1| conserved domain protein [Bacillus anthracis str. Ames] gb|AAP26443.1| conserved domain protein [Bacillus anthracis str. Ames] Length = 209 Score = 121 bits (304), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 3/186 (1%) Query: 3 QYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSD-LETYG 61 ++W + F + +WG +P+ SA+ K +FLE+ VK +LVPG GYGRN KVF + + G Sbjct: 2 EFWESSFIEKQTMWGFEPTESAILTKDFFLEKNVKDILVPGIGYGRNAKVFIDNGINVIG 61 Query: 62 VELSGEALELAAGRDSQTRFI-EGSALEPQLDI-LVDAVYCYDVLHLFLAGERRQLIAAC 119 +E+S A++LA + I GS E D L D ++ + +LHL ER + I C Sbjct: 62 IEISKTAIDLATQNGLEDISIYHGSVNEMPFDTNLYDGIFSHALLHLLNDQEREKFIKNC 121 Query: 120 LAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVVE 179 QL+PGG + FT+ S + G G+ L+ YE EG F+ +++ F +V+ Sbjct: 122 FNQLKPGGYMVFTTVSKKAPMYGKGKQLDKDYYEIMEGVKMFFYDSESIKQDFKKYGLVQ 181 Query: 180 TGTFQE 185 E Sbjct: 182 VSQIDE 187 >ref|NP_832291.1| Methyltransferase [Bacillus cereus ATCC 14579] gb|AAP09492.1| Methyltransferase [Bacillus cereus ATCC 14579] Length = 209 Score = 118 bits (296), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 103/187 (55%), Gaps = 5/187 (2%) Query: 3 QYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFSSD-LETYG 61 ++W + F + +WG +P+ SA+ K +FLE+ VK++LVPG GYGRN KVF + + G Sbjct: 2 EFWESSFIEKQTMWGFEPTESAILTKDFFLEKNVKNILVPGIGYGRNAKVFIDNGINVTG 61 Query: 62 VELSGEALELA--AGRDSQTRFIEGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAA 118 +E+S A++LA G + + + GS E D L D ++ + +LHL ER + I Sbjct: 62 IEISKTAIDLARENGLEDVSMY-HGSVNEMPFDNKLYDGIFSHALLHLLNEQEREKFIED 120 Query: 119 CLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVV 178 C QL+PGG + FT+ S + G G+ L+ YE +G F+ +++ F+ +V Sbjct: 121 CYNQLKPGGYMVFTTVSKKAPMYGKGKQLDKDYYEIMDGVKMFFYDSESIKKDFNQYRLV 180 Query: 179 ETGTFQE 185 + E Sbjct: 181 QVSEIDE 187 >ref|NP_978915.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS41523.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 209 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 64/186 (34%), Positives = 99/186 (53%), Gaps = 3/186 (1%) Query: 3 QYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVF-SSDLETYG 61 ++W + F + +WG +P+ SA+ AK +FLE+ VK +LVPG GYGRN KVF + + G Sbjct: 2 EFWESSFIEKQTMWGFEPTESAILAKDFFLEKNVKDILVPGIGYGRNAKVFIENSINVTG 61 Query: 62 VELSGEALELAAGRDSQTRFI-EGSALEPQLD-ILVDAVYCYDVLHLFLAGERRQLIAAC 119 +E+S A++LA + I GS E D L D ++ + +LHL ER I C Sbjct: 62 IEISKTAIDLARENGLEDVSIYHGSVNEMPFDNKLYDGIFSHALLHLLNDQEREGFIENC 121 Query: 120 LAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVVE 179 QL+PG + FT+ S + G G+ L+ YE EG F+ +++ F+ +V+ Sbjct: 122 YNQLKPGAYMVFTTVSKKAPMYGKGKQLDKDYYEIMEGVKMFFYDSESIKKDFNQYGLVQ 181 Query: 180 TGTFQE 185 E Sbjct: 182 VSEIDE 187 >ref|NP_691708.1| hypothetical protein OB0787 [Oceanobacillus iheyensis HTE831] dbj|BAC12743.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 209 Score = 106 bits (265), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 2/185 (1%) Query: 3 QYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVF-SSDLETYG 61 ++W F + +WG +P+ +A++AK F+++ VKS+L+PG GYGRN KVF ++ G Sbjct: 2 EFWEASFLDKQAMWGYEPTDAAIKAKDVFIDKNVKSILLPGIGYGRNAKVFLEKGIDVTG 61 Query: 62 VELSGEALELAAGRDSQTRFIEGSALE-PQLDILVDAVYCYDVLHLFLAGERRQLIAACL 120 +E+S A+ LA G E P D D ++ + ++HL ER + I C Sbjct: 62 IEISKTAINLARKSGIDIPIFHGPVSEMPFDDKQYDGIFSHALIHLLNNEERDKFIQDCY 121 Query: 121 AQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREHFSAAEVVET 180 QL P G + FT+ S E G G+ L YE K+G +F+ + + F +V+ Sbjct: 122 DQLIPNGYMIFTTVSKEALMYGKGKQLGEDYYETKDGVKLYFYDAESIDQDFKDYGLVDF 181 Query: 181 GTFQE 185 +E Sbjct: 182 RQVEE 186 >gb|EAI90530.1| unknown [environmental sequence] Length = 209 Score = 62.8 bits (151), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 49/201 (24%), Positives = 95/201 (47%), Gaps = 16/201 (7%) Query: 2 SQYWSTRFAREGMIWGDQPSPSALRAKAWFLEQGVKSVLVPGAGYGRNTKVFS-SDLETY 60 SQ+W F+ + ++G +PS SA +A +F E+ + +++ GAG GR++ F+ ++++ Sbjct: 10 SQHWEKNFSNKPEMFGLEPSISAKKALNFFKEKKINNIIELGAGLGRDSIFFAKNNIKIQ 69 Query: 61 GVELSGEALEL---AAGRDSQTRFIEGSALE-----PQLDILVDAVYCYDVLHLFLA-GE 111 ++ S +E+ RD+ + +I + P D +DA Y + + + L + Sbjct: 70 ALDYSSSGIEIINHKIKRDNLSNYISTKLFDVREKLPFKDNSIDACYSHMLYCMALTIAD 129 Query: 112 RRQLIAACLAQLRPGGLLYFTSFSDEDSNNGHGRMLEPGTYEYKEGKYAHFFSDADLREH 171 ++L L+P GL +T D + +G+ + YE +G H+FS+ + Sbjct: 130 LQKLNNEIHRILKPNGLNIYTVRHTNDGDYKNGKHIGEDLYE-NDGFIVHYFSEEKVNSL 188 Query: 172 FS-----AAEVVETGTFQESL 187 + E E GTF L Sbjct: 189 LNGFKNITLEKFEEGTFPRKL 209 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 334,944,470 Number of extensions: 13941300 Number of successful extensions: 27817 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 27823 Number of HSP's successfully gapped: 14 Length of query: 213 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 93 Effective length of database: 431,425,698 Effective search space: 40122589914 Effective search space used: 40122589914 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)