BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0010.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244297.1| BH3430~unknown conserved protein [Bacillus halo... 97 2e-19 ref|NP_981391.1| conserved hypothetical protein [Bacillus cereus... 95 7e-19 ref|NP_653426.1| hypothetical protein predicted by GeneMark [Bac... 94 8e-19 ref|NP_834632.1| hypothetical Cytosolic Protein [Bacillus cereus... 94 1e-18 ref|NP_693283.1| hypothetical protein OB2362 [Oceanobacillus ihe... 93 2e-18 >ref|NP_244297.1| BH3430~unknown conserved protein [Bacillus halodurans] pir||F84078 hypothetical protein BH3430 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07149.1| BH3430~unknown conserved protein [Bacillus halodurans] Length = 151 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/144 (42%), Positives = 83/144 (57%), Gaps = 9/144 (6%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK IE L + I + + W T L ER HL IE V DVG+S+ID Sbjct: 1 MYFVDRKTIEETLRHMEKIVDHF-CSQSEWTSET-ERLALERIAHLVIESVIDVGNSMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVF---EGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPL 141 GFIMRD GSYEDI+ I+ +E V +G SL L+A RK +VQ Y A D L Sbjct: 59 GFIMRDPGSYEDIVDILIDENVVDEADGQSLKA----LIACRKLVVQAYTAIDHQQLKQT 114 Query: 142 TAKLPEALEQFAAAVQSYLDQELG 165 + EA+++F V++YL++ELG Sbjct: 115 FDQHVEAVKRFPERVRTYLEKELG 138 >ref|NP_981391.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43999.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 146 Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK+IE +L + + F L ER HL I+ V DVG+++ID Sbjct: 1 MYFVDRKKIEQMLVCLERATSTFQEKKIYETEFEFYAL--ERIAHLMIDCVLDVGNAMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFIMRD GSYEDII I+ +E+V G+ +++ LRK L QDY + L+ K Sbjct: 59 GFIMRDPGSYEDIIDILMDERVISTEDGQGMK-EIILLRKMLTQDYIQMNHDELYKTIQK 117 Query: 145 LPEALEQFAAAVQSYLDQELG 165 +E++ A ++SYL++ELG Sbjct: 118 HIAVVEKYPANIRSYLEKELG 138 >ref|NP_653426.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_847377.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28863.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 146 Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK+IE +L + + F L ER HL I+ V DVG+++ID Sbjct: 1 MYFVDRKKIEQMLVCLERATSTFQEKKIYETEFEFYAL--ERIAHLMIDSVLDVGNAMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFIMRD GSYEDII I+ +E+V G+ +++ LRK L QDY + L+ K Sbjct: 59 GFIMRDPGSYEDIIDILMDERVISAEDGQGMK-EIILLRKMLTQDYIQMNHDELYKTIQK 117 Query: 145 LPEALEQFAAAVQSYLDQELG 165 +E++ A ++SYL++ELG Sbjct: 118 HIAVVEKYPANIRSYLEKELG 138 >ref|NP_834632.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP11833.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 146 Score = 94.0 bits (232), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 3/141 (2%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTFTGLVQERCLHLAIEVVTDVGSSLID 84 +Y+V+RK+IE +L + + F L ER HL I+ V DVG+++ID Sbjct: 1 MYFVDRKKIEQMLVCLERATSTFQEKKIYETEFEFYAL--ERIAHLIIDCVLDVGNAMID 58 Query: 85 GFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTAK 144 GFIMRD GSYEDII I+ +E+V G+ +++ LRK L QDY + L+ K Sbjct: 59 GFIMRDPGSYEDIIDILMDERVISEEDGQGMK-EIILLRKMLTQDYIQMNHDELYKTIQK 117 Query: 145 LPEALEQFAAAVQSYLDQELG 165 +E++ A ++SYL++ELG Sbjct: 118 HIAVVEKYPANIRSYLEKELG 138 >ref|NP_693283.1| hypothetical protein OB2362 [Oceanobacillus iheyensis HTE831] dbj|BAC14318.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 148 Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 5/142 (3%) Query: 25 VYYVNRKQIEIILGQIPDINKGLRAAAASWDGGTF-TGLVQERCLHLAIEVVTDVGSSLI 83 +Y+V+++++E IL + + L+ ++S TF + +ER H+ IE + DVG+ +I Sbjct: 1 MYFVDQQKMEEILTYMDTVIDELKKQSSS---TTFLDKMAKERMTHIVIESILDVGNMMI 57 Query: 84 DGFIMRDAGSYEDIISIIHEEKVFEGSSLYGLLIQLVALRKPLVQDYYAWDRTSLHPLTA 143 DGFIMRD GSYEDII I+ +E V E + +++ LRK +V +Y D + L Sbjct: 58 DGFIMRDPGSYEDIIDILLDENVLEAEHEHAYK-RIIELRKQIVNNYREVDHNLISDLLN 116 Query: 144 KLPEALEQFAAAVQSYLDQELG 165 E + QF+ +Q+YL ELG Sbjct: 117 DHLEEIAQFSKYIQTYLQNELG 138 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 253,199,538 Number of extensions: 9952796 Number of successful extensions: 20099 Number of sequences better than 1.0e-05: 10 Number of HSP's gapped: 20091 Number of HSP's successfully gapped: 10 Length of query: 170 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 53 Effective length of database: 439,570,995 Effective search space: 23297262735 Effective search space used: 23297262735 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)