BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0291.0009.p (220 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244296.1| BH3429~unknown conserved protein in others [Bac... 187 2e-46 ref|NP_847376.1| transcriptional regulator, DeoR family [Bacillu... 146 3e-34 ref|NP_834631.1| Transcriptional regulator, DeoR family [Bacillu... 144 1e-33 ref|NP_981390.1| transcriptional regulator, DeoR family [Bacillu... 144 1e-33 ref|NP_653425.1| deoR, Bacterial regulatory proteins, deoR famil... 129 5e-29 >ref|NP_244296.1| BH3429~unknown conserved protein in others [Bacillus halodurans] pir||E84078 hypothetical protein BH3429 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07148.1| BH3429~unknown conserved protein in others [Bacillus halodurans] Length = 215 Score = 187 bits (474), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 93/205 (45%), Positives = 132/205 (64%), Gaps = 2/205 (0%) Query: 5 QESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGR 64 E+ STR +I+ LK G ++G +A+EL ITEM VRRH+ LE++ +TK+VRQAMGR Sbjct: 4 NETTSTRDLILLGLKRHGERSVGEMAKELEITEMAVRRHIQALEKDGFVQTKLVRQAMGR 63 Query: 65 PLHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAPMMEK 124 P Y LTE+ E+ FP++Y L L L++++ SG + ++VLFE R++R+LA+YA M+ Sbjct: 64 PTTKYLLTEKGEERFPRNYLPLTLGFLKDIEELSGIDMIHVLFEKRKERLLAEYANQMKG 123 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 + ERV L+ IQN GYM EW + +D +Y EYNCPI QVA Y AC CE+ LF+E Sbjct: 124 CSFSERVEVLAQIQNDNGYMVEWKKIDDDTYQFIEYNCPISQVAKAYPVACACEKKLFKE 183 Query: 185 LLGAKVTRTECMAEGGQS--CRYAI 207 LL + C A ++ C Y + Sbjct: 184 LLQTEAVVDNCCAAKDEAGYCSYTL 208 >ref|NP_847376.1| transcriptional regulator, DeoR family [Bacillus anthracis str. Ames] gb|AAP28862.1| transcriptional regulator, DeoR family [Bacillus anthracis str. Ames] Length = 210 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 128/208 (61%), Gaps = 2/208 (0%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRP 65 E+ +T+ I+ LLK+KG T+ LAE L ITEM +RRH+ LE++ +K+VRQ +GRP Sbjct: 3 EARTTKDEIIQLLKVKGEHTVAELAEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRP 62 Query: 66 LHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAP-MMEK 124 ++Y L+E+ ED FPK Y A+++L +L ++ + + + R KRM Q + + Sbjct: 63 TYLYGLSEKGEDTFPKEYKQFAIDMLEDLARMGDEQILRYVLKERTKRMEEQLQKRVSNQ 122 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 +NL +V E++++Q GYM + ++ + S+V+++ NCP++++A ++ + C+ E+ ++ Sbjct: 123 KNLAYKVQEIAAMQEKNGYMVQIKRDGENSFVIEKQNCPLKEIAERFPQVCEDEKEMYNR 182 Query: 185 LL-GAKVTRTECMAEGGQSCRYAITPRK 211 L GA V M EG SC Y + +K Sbjct: 183 LFAGADVKTLANMCEGDCSCSYQVKEKK 210 >ref|NP_834631.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] gb|AAP11832.1| Transcriptional regulator, DeoR family [Bacillus cereus ATCC 14579] Length = 210 Score = 144 bits (364), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 130/208 (62%), Gaps = 2/208 (0%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRP 65 E+ +T+ I+ LLK+KG T+ LA+ L ITEM +RRH+ LE++ L +K+VRQ +GRP Sbjct: 3 EARTTKDEIVQLLKVKGEHTVAELADVLEITEMAIRRHLSNLEKDGLIYSKMVRQHVGRP 62 Query: 66 LHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAP-MMEK 124 ++Y L+E+ ED FPK Y A+++L +L ++ + + + R KRM Q + + Sbjct: 63 TYLYGLSEKGEDTFPKEYKQFAIDMLEDLARMGDEKILRYVLKERTKRMEEQLQKRVSNQ 122 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 +NL +V E++++Q GYM + ++ + S+V+++ NCP++++A ++ + C+ E+ +++ Sbjct: 123 KNLAYKVQEIAAMQEKNGYMVQIKRDGEKSFVIEKQNCPLKEIAERFPQVCEDEKEMYKR 182 Query: 185 LL-GAKVTRTECMAEGGQSCRYAITPRK 211 L A+V M EG SC Y I +K Sbjct: 183 LFTNAEVKTLANMCEGDCSCSYQIKEKK 210 >ref|NP_981390.1| transcriptional regulator, DeoR family [Bacillus cereus ATCC 10987] gb|AAS43998.1| transcriptional regulator, DeoR family [Bacillus cereus ATCC 10987] Length = 210 Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/208 (35%), Positives = 127/208 (61%), Gaps = 2/208 (0%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRP 65 E+ +T+ I+ LLK+KG T+ LAE L ITEM +RRH+ LE++ +K+VRQ +GRP Sbjct: 3 EARTTKDEIVQLLKVKGEHTVAELAEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRP 62 Query: 66 LHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAP-MMEK 124 ++Y L+E+ ED FPK Y A+++L +L ++ + + + R KRM Q + + Sbjct: 63 TYLYGLSEKGEDTFPKEYKQFAIDMLEDLARMGDEKILRYVLKERTKRMEEQLQKRVSNQ 122 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQCEQALFEE 184 +NL +V E++++Q GYM + ++ + S+V+++ NCP++++A ++ + C+ E+ ++ Sbjct: 123 KNLAYKVQEIAAMQEKNGYMVQIKRDGENSFVIEKQNCPLKEIAERFPQVCEDEKEMYNR 182 Query: 185 LLG-AKVTRTECMAEGGQSCRYAITPRK 211 L A V M EG SC Y I +K Sbjct: 183 LFANADVKTLANMCEGDCSCSYQIKEKK 210 >ref|NP_653425.1| deoR, Bacterial regulatory proteins, deoR family [Bacillus anthracis A2012] Length = 188 Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 61/172 (35%), Positives = 111/172 (64%), Gaps = 1/172 (0%) Query: 6 ESGSTRRMIMTLLKMKGPLTIGALAEELGITEMGVRRHVLQLEQEALAKTKVVRQAMGRP 65 E+ +T+ I+ LLK+KG T+ LAE L ITEM +RRH+ LE++ +K+VRQ +GRP Sbjct: 3 EARTTKDEIIQLLKVKGEHTVAELAEILEITEMAIRRHLSNLEKDGFIYSKMVRQHVGRP 62 Query: 66 LHVYSLTERAEDHFPKSYHNLALELLRELDHGSGQEAVNVLFEGRRKRMLAQYAP-MMEK 124 ++Y L+E+ ED FPK Y A+++L +L ++ + + + R KRM Q + + Sbjct: 63 TYLYGLSEKGEDTFPKEYKQFAIDMLEDLARMGDEQILRYVLKERTKRMEEQLQKRVSNQ 122 Query: 125 RNLEERVAELSSIQNAGGYMAEWNQEEDGSYVMQEYNCPIRQVATQYRKACQ 176 +NL +V E++++Q GYM + ++ + S+V+++ NCP++++A ++ + C+ Sbjct: 123 KNLAYKVQEIAAMQEKNGYMVQIKRDGENSFVIEKQNCPLKEIAERFPQVCE 174 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.130 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 293,225,533 Number of extensions: 10583126 Number of successful extensions: 28185 Number of sequences better than 1.0e-05: 56 Number of HSP's gapped: 28110 Number of HSP's successfully gapped: 56 Length of query: 220 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 99 Effective length of database: 428,710,599 Effective search space: 42442349301 Effective search space used: 42442349301 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)