BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0079.p (147 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|EAC67867.1| unknown [environmental sequence] 91 7e-18 ref|ZP_00019439.1| hypothetical protein [Chloroflexus aurantiacus] 77 9e-14 gb|EAJ95282.1| unknown [environmental sequence] 71 1e-11 ref|NP_302721.1| conserved hypothetical protein [Mycobacterium l... 69 3e-11 gb|EAF40736.1| unknown [environmental sequence] 69 3e-11 >gb|EAC67867.1| unknown [environmental sequence] Length = 151 Score = 90.9 bits (224), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 7/134 (5%) Query: 9 SAGGVVYRQGADGLEVQLIVDRYGR--IALPKGKMEQGETVEETALREIREETGTVGAIK 66 SAGGVV R + EV LI +R+ IALPKGK +GE TA+RE+REETG IK Sbjct: 19 SAGGVVVRNNNNQTEV-LICERFSENLIALPKGKPNEGEYEAATAIREVREETGINAIIK 77 Query: 67 APIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEWHDPAAAWIRGTGNS 126 I I Y+F+ P +G++NK+V +FL+E + GE +E + V W +A + S Sbjct: 78 NKIKDIFYSFESP-NGIINKKVSFFLMEKIDGEISNHDDEFDKVYWEKWDSALNKL---S 133 Query: 127 YSNNIQVLRKALSL 140 Y VL KA+ L Sbjct: 134 YQGEKDVLEKAIEL 147 >ref|ZP_00019439.1| hypothetical protein [Chloroflexus aurantiacus] Length = 158 Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 2/132 (1%) Query: 9 SAGGVVYRQGADGLEVQLI-VDRYGRIALPKGKMEQGETVEETALREIREETGTVGAIKA 67 SAGGV+YR A +EV LI DR R LPKG + +GET E A+REI EETG G ++ Sbjct: 20 SAGGVIYRIVATQIEVALIATDRGERWGLPKGHVNRGETAEAAAVREIAEETGLEGVVER 79 Query: 68 PIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEWHDPAAAWIRGTGNSY 127 + I+Y F+ HG V+K V FL+ GE + Q E++ W A R + Sbjct: 80 HLATIEYWFRSG-HGRVHKYVDLFLLRYERGEVRPQIGEVDDARWFPLDEALQRVSFERE 138 Query: 128 SNNIQVLRKALS 139 + + + R+AL Sbjct: 139 RDVLLLARQALC 150 >gb|EAJ95282.1| unknown [environmental sequence] Length = 150 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 52/134 (38%), Positives = 70/134 (52%), Gaps = 7/134 (5%) Query: 9 SAGGVVYRQGADGLEVQLIVDRYGR--IALPKGKMEQGETVEETALREIREETGTVGAIK 66 SAGGVV R +EV LI +R+ +ALPKGK GE ++TALRE+ EETG IK Sbjct: 18 SAGGVVLRTTNKNIEV-LICERFSENLVALPKGKPNLGEDEKDTALREVMEETGIKVQIK 76 Query: 67 APIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEWHDPAAAWIRGTGNS 126 I I Y+F++ + K Y L+E +GG+T E + V W A + T Sbjct: 77 VKIKDIFYSFKNNNKNVNKKVTFY-LMEEIGGDTSNHDAEFDKVYWEQSGPALKKLT--- 132 Query: 127 YSNNIQVLRKALSL 140 Y VL +A+ L Sbjct: 133 YQGEKDVLEEAIKL 146 >ref|NP_302721.1| conserved hypothetical protein [Mycobacterium leprae] pir||H87246 conserved hypothetical protein ML2698 [imported] - Mycobacterium leprae gb|AAB53126.1| L222-ORF6; putative emb|CAC32230.1| conserved hypothetical protein [Mycobacterium leprae] Length = 251 Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 10/114 (8%) Query: 7 QISAGGVVYRQGADGLEVQLI------VDRYGRI--ALPKGKMEQGETVEETALREIREE 58 + SAGG+V G DG + +DR GR+ +LPKG +EQGET E+TA+RE+ EE Sbjct: 67 ETSAGGLVI-YGIDGPRDAQVAALIGRIDRRGRMLWSLPKGHIEQGETAEQTAIREVAEE 125 Query: 59 TGTVGAIKAPIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEW 112 TG G++ A + I Y F V+K VH++L+ GGE E+ V W Sbjct: 126 TGIRGSVLAALGQIDYWFV-TDDCRVHKTVHHYLMRFSGGELSDDDLEVTEVAW 178 >gb|EAF40736.1| unknown [environmental sequence] Length = 145 Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 10/112 (8%) Query: 6 KQISAGGVVYRQGADG-LEVQLIVDRYGR----IALPKGKMEQGETVEETALREIREETG 60 ++ SAGG+V DG LI R R +LPKG +E+GE+ E A+RE+ EETG Sbjct: 30 EETSAGGLVL----DGDRRAALIGRRNARGVVLWSLPKGHIEEGESAEVAAIREVGEETG 85 Query: 61 TVGAIKAPIDVIKYTFQHPVHGLVNKEVHYFLVESVGGETKAQTEEINAVEW 112 VG + AP+ VI +TF + ++K VH+FL+ + GGE EI+ V W Sbjct: 86 IVGRVVAPLGVIDFTFTASEY-RIHKTVHHFLMFAEGGELTDDDAEIDEVAW 136 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.133 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 214,789,627 Number of extensions: 8198123 Number of successful extensions: 16943 Number of sequences better than 1.0e-05: 33 Number of HSP's gapped: 16977 Number of HSP's successfully gapped: 33 Length of query: 147 Length of database: 757,237,578 Length adjustment: 107 Effective length of query: 40 Effective length of database: 466,721,985 Effective search space: 18668879400 Effective search space used: 18668879400 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 120 (50.8 bits)