BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0074.p (206 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_819422.1| DNA-3-methyladenine glycosidase I [Coxiella bur... 238 9e-62 ref|ZP_00152210.1| hypothetical protein Daro039501 [Dechloromona... 236 2e-61 ref|NP_927654.1| DNA-3-methyladenine glycosylase I (3-methyladen... 236 2e-61 ref|NP_714012.1| DNA-3-methyladenine glycosidase I tag [Leptospi... 235 4e-61 ref|NP_522227.1| PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROT... 234 1e-60 >ref|NP_819422.1| DNA-3-methyladenine glycosidase I [Coxiella burnetii RSA 493] gb|AAO89936.1| DNA-3-methyladenine glycosidase I [Coxiella burnetii RSA 493] Length = 204 Score = 238 bits (606), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 106/178 (59%), Positives = 132/178 (74%) Query: 19 RCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVFDG 78 RC WV+ DPLYI YHD EWG P+YDDR LFE L+LEGMQAGLSW T+LKKR ++R+ F+ Sbjct: 12 RCAWVSNDPLYIHYHDLEWGVPIYDDRLLFEFLILEGMQAGLSWLTILKKRNNYRDSFNN 71 Query: 79 FDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFTGG 138 FD I Y+ KI+ L+++ GIIRN+LKIQA I NA F E+ +E F++Y+W F G Sbjct: 72 FDASIISKYNPRKIDRLLENAGIIRNKLKIQATINNAKAFLEVKKEWRNFSDYIWHFVDG 131 Query: 139 KPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCF 196 P+ NQWK ++P S SD +SK LKK+G KFVGSTICYAFMQA GMV+DHT +CF Sbjct: 132 HPIQNQWKNAKQIPTRSAISDVLSKDLKKRGFKFVGSTICYAFMQAVGMVNDHTTNCF 189 >ref|ZP_00152210.1| hypothetical protein Daro039501 [Dechloromonas aromatica RCB] Length = 196 Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/190 (59%), Positives = 133/190 (70%) Query: 15 LQITRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFRE 74 + + RC W LY YHD EWG PL DDR LFELL+LEG QAGLSW TVLKKREH+R+ Sbjct: 1 MTMERCPWCEGFDLYREYHDTEWGLPLRDDRALFELLILEGAQAGLSWATVLKKREHYRQ 60 Query: 75 VFDGFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWS 134 VFD FDP KI YDE K+ AL+ D GIIRNR KI A IQNA + ++ E F+++LWS Sbjct: 61 VFDHFDPHKIARYDEQKVAALLADPGIIRNRAKIAATIQNANAYLSLTAEGQSFSDFLWS 120 Query: 135 FTGGKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTAD 194 F GG PV N + +EVPA + QSD +SKAL + G KFVGSTICYAFMQASGMV+DH Sbjct: 121 FVGGAPVQNARSSLAEVPAKTTQSDALSKALTRAGFKFVGSTICYAFMQASGMVNDHLVS 180 Query: 195 CFCRSSQQGS 204 C QG+ Sbjct: 181 CPRYEEVQGA 190 >ref|NP_927654.1| DNA-3-methyladenine glycosylase I (3-methyladenine-DNA glycosylase I, constitutive) (TAG I) (DNA-3-methyladenine glycosidase I) [Photorhabdus luminescens subsp. laumondii TTO1] emb|CAE12587.1| DNA-3-methyladenine glycosylase I (3-methyladenine-DNA glycosylase I, constitutive) (TAG I) (DNA-3-methyladenine glycosidase I) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 190 Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 101/184 (54%), Positives = 135/184 (73%) Query: 15 LQITRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFRE 74 +++TRC WV DP Y+AYHD EWGKPL D +KLFE++ LEG Q+GLSW T+LKKRE +R+ Sbjct: 6 MELTRCHWVTSDPQYLAYHDNEWGKPLQDSQKLFEMICLEGQQSGLSWLTILKKREGYRK 65 Query: 75 VFDGFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWS 134 F FDP KI + DE + LM D I+RNR KI A+I NA + ++ ++ F+ ++W Sbjct: 66 CFHQFDPVKIAVMDENDVARLMLDPAIVRNRAKINAIINNARAYLKMQQQGEEFSTFIWR 125 Query: 135 FTGGKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTAD 194 F KP+INQWKT +EVP + SD++S+ALKK+G KF+GST CYAFMQA+G+V+DH D Sbjct: 126 FVDNKPIINQWKTITEVPIKTDLSDELSQALKKRGFKFIGSTTCYAFMQATGLVNDHITD 185 Query: 195 CFCR 198 C CR Sbjct: 186 CLCR 189 >ref|NP_714012.1| DNA-3-methyladenine glycosidase I tag [Leptospira interrogans serovar lai str. 56601] gb|AAN51030.1| DNA-3-methyladenine glycosidase I tag [Leptospira interrogans serovar lai str. 56601] Length = 201 Score = 235 bits (600), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 105/179 (58%), Positives = 133/179 (74%) Query: 19 RCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVFDG 78 RC WV ED Y+ YHD+EWG ++DDR LFE L+LEG QAGLSW T+L+KRE+FR+ FD Sbjct: 13 RCAWVTEDSDYVKYHDQEWGVSVHDDRLLFEFLVLEGAQAGLSWITILRKRENFRKAFDN 72 Query: 79 FDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFTGG 138 FD ++ Y E KI++L++D GI+RN LKI++VI+NA F I +E G F ++W F Sbjct: 73 FDVVQVAAYKENKIQSLLKDKGIVRNELKIRSVIKNAQEFLNIQKEYGTFDRFIWGFVNH 132 Query: 139 KPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCFC 197 K + N WKT +VP S +SD MSKALKK+G KFVGSTICYAFMQA+GM+ DHT DCFC Sbjct: 133 KTIYNSWKTIKDVPNKSTESDAMSKALKKRGFKFVGSTICYAFMQATGMIMDHTTDCFC 191 >ref|NP_522227.1| PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN [Ralstonia solanacearum] emb|CAD17817.1| PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE I PROTEIN [Ralstonia solanacearum] Length = 190 Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 100/180 (55%), Positives = 131/180 (72%) Query: 17 ITRCDWVNEDPLYIAYHDEEWGKPLYDDRKLFELLMLEGMQAGLSWYTVLKKREHFREVF 76 ++RC WV EDPL IAYHD EWG P +DDR L+E+L+LEG QAGLSW T+L+KR ++EVF Sbjct: 1 MSRCCWVGEDPLMIAYHDTEWGTPSHDDRHLYEMLVLEGAQAGLSWQTILRKRARYQEVF 60 Query: 77 DGFDPGKIVLYDEAKIEALMQDTGIIRNRLKIQAVIQNAVVFQEISREAGGFANYLWSFT 136 DGFDP ++ + A+IE L+ D GI+RNR K++A + NA E+ G +LW+F Sbjct: 61 DGFDPARVARFTPARIETLLADPGIVRNRAKVEAAVVNARKVLEVQDAVGSLDGFLWAFV 120 Query: 137 GGKPVINQWKTRSEVPATSPQSDQMSKALKKKGMKFVGSTICYAFMQASGMVDDHTADCF 196 GG+PV+N+W + + PA++ S MSKAL +G KFVG TICYAFMQA+GMVDDH A CF Sbjct: 121 GGRPVVNRWSSYRDAPASTEASKAMSKALAARGFKFVGPTICYAFMQATGMVDDHEAGCF 180 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 312,056,265 Number of extensions: 12265685 Number of successful extensions: 26873 Number of sequences better than 1.0e-05: 187 Number of HSP's gapped: 26804 Number of HSP's successfully gapped: 187 Length of query: 206 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 86 Effective length of database: 431,425,698 Effective search space: 37102610028 Effective search space used: 37102610028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 123 (52.0 bits)