BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0064.p
         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00100599.1| hypothetical protein [Desulfitobacterium hafn...    64   1e-09

>ref|ZP_00100599.1| hypothetical protein [Desulfitobacterium hafniense]
          Length = 121

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 1   MSEKSILAYFKSPEEAEAVSRKLQSLRVIDMSINRFSKYPGNAQYSGNNPLTGDIPSLAT 60
           M+E++ILAYF + E+AE ++ +++ L + D+ I+R  K+         NPLTG + SLA 
Sbjct: 1   MAERNILAYFNTVEQAEVIANRIKDLGITDVQIDRIHKFSEATADHLMNPLTGQMGSLAD 60

Query: 61  MTLNSTPDTRXXXXXXXXXXXXXXXXXXXEGGPT---GRDILLTVVLDSGVFDQALSLIE 117
           +TL S                        +GG T   GRDILL  ++D   F+Q    I 
Sbjct: 61  LTLGSGG-----GGAGPLMAADTSASGMSDGGGTAASGRDILLAAIVDESQFEQLRQEIR 115

Query: 118 EAGGMI 123
              G+I
Sbjct: 116 AQDGLI 121


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.312    0.131    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 153,536,281
Number of extensions: 4525432
Number of successful extensions: 7524
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 7522
Number of HSP's successfully gapped: 1
Length of query: 123
Length of database: 757,237,578
Length adjustment: 87
Effective length of query: 36
Effective length of database: 521,023,965
Effective search space: 18756862740
Effective search space used: 18756862740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 120 (50.8 bits)