BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0059.p
         (81 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_603025.1| unknown [Fusobacterium nucleatum subsp. nucleat...    63   2e-09
gb|EAC55838.1| unknown [environmental sequence]                        62   5e-09
gb|EAF17432.1| unknown [environmental sequence]                        60   1e-08
gb|EAG08790.1| unknown [environmental sequence]                        60   2e-08
gb|EAH45727.1| unknown [environmental sequence]                        59   2e-08

>ref|NP_603025.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
 gb|AAL94324.1| unknown [Fusobacterium nucleatum subsp. nucleatum ATCC 25586]
          Length = 98

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 35/43 (81%)

Query: 36 TTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTVSA 78
          TT+GVV APS FGI  A PPSITATQE VVPKSIPI LL +S+
Sbjct: 31 TTDGVVLAPSEFGIIVALPPSITATQEFVVPKSIPIILLILSS 73


>gb|EAC55838.1| unknown [environmental sequence]
          Length = 72

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 33/43 (76%)

Query: 34 KPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLLTV 76
          KP TEGVVR PS  GITT S PSIT T ELVVPKSIPI LL V
Sbjct: 25 KPITEGVVRFPSALGITTGSFPSITETHELVVPKSIPIILLIV 67


>gb|EAF17432.1| unknown [environmental sequence]
          Length = 83

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 32/41 (78%)

Query: 34 KPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITLL 74
          K TTEGVV APS F  T A  PSITATQE VVPKSIPITLL
Sbjct: 25 KATTEGVVLAPSAFSKTFACVPSITATQEFVVPKSIPITLL 65


>gb|EAG08790.1| unknown [environmental sequence]
          Length = 76

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 31/41 (75%)

Query: 33 LKPTTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITL 73
          LK T EGVV APS F IT AS PSITAT E VVPKSIPIT 
Sbjct: 27 LKATIEGVVLAPSAFSITFASLPSITATHEFVVPKSIPITF 67


>gb|EAH45727.1| unknown [environmental sequence]
          Length = 77

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 31/38 (81%)

Query: 36 TTEGVVRAPSGFGITTASPPSITATQELVVPKSIPITL 73
          T EGVV APS F IT A PPSITATQ LVVPKSIPITL
Sbjct: 30 TIEGVVLAPSAFSITLALPPSITATQLLVVPKSIPITL 67


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.319    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,883,688
Number of extensions: 3016671
Number of successful extensions: 7117
Number of sequences better than 1.0e-05: 56
Number of HSP's gapped: 7117
Number of HSP's successfully gapped: 56
Length of query: 81
Length of database: 757,237,578
Length adjustment: 51
Effective length of query: 30
Effective length of database: 618,767,529
Effective search space: 18563025870
Effective search space used: 18563025870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)