BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0056.p
         (179 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_978987.1| short chain dehydrogenase family protein [impor...   133   2e-30
gb|EAD12607.1| unknown [environmental sequence]                        57   2e-07
ref|NP_566798.1| short-chain dehydrogenase/reductase (SDR) famil...    55   9e-07
gb|AAK97686.1| AT3g26770/MDJ14_21 [Arabidopsis thaliana]               55   1e-06
gb|AAN64238.1| ORFUP [Sphingomonas paucimobilis]                       54   2e-06

>ref|NP_978987.1| short chain dehydrogenase family protein [imported] [Bacillus
           cereus ATCC 10987]
 gb|AAS41595.1| short chain dehydrogenase family protein [imported] [Bacillus
           cereus ATCC 10987]
          Length = 273

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 83/135 (61%)

Query: 45  TVAELEGLGGACRFVQVDVADGPAVGLTASLHYEAEAYGVKVSCLCPAFVDTPIFDSGEA 104
             A   GLG A             VGLT SLHYEAE YGV VS LCP FVDTPIF+   A
Sbjct: 137 NTASATGLGPAPLCTAYATTKHAIVGLTTSLHYEAEEYGVNVSVLCPTFVDTPIFEKSIA 196

Query: 105 VHMDXXXXXXXXXXXXXMTPEHFAGIAFKGIERNEELVNPMPLRRTMDVVFTLFPSLHRK 164
           ++M+             ++ + FA IA K I +N+ ++ PMPL++TMDV+FTLFP LH+K
Sbjct: 197 INMNKSQIIKQLKTNKPISADKFAEIALKAIHKNKLVICPMPLKKTMDVLFTLFPYLHKK 256

Query: 165 VMRLVCRTTREARLS 179
           +MR VCR  R+A+++
Sbjct: 257 LMRFVCRIGRKAKMN 271



 Score = 59.7 bits (143), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 44/69 (63%), Gaps = 1/69 (1%)

Query: 1  MDQIQRVGIVTGGASGIGKALCKELLKRRVYIVIADLNAEEGVKTVAELEGLGGACRFVQ 60
          MD+ QRV IVTGGASGIGKAL  +L  + ++++IAD+N   G + V  ++      RF  
Sbjct: 1  MDE-QRVAIVTGGASGIGKALAIQLANKDIFVIIADINETSGQELVNNIKNNNQLARFEY 59

Query: 61 VDVADGPAV 69
          +DV +  +V
Sbjct: 60 LDVTNAGSV 68


>gb|EAD12607.1| unknown [environmental sequence]
          Length = 119

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 40/65 (61%)

Query: 5  QRVGIVTGGASGIGKALCKELLKRRVYIVIADLNAEEGVKTVAELEGLGGACRFVQVDVA 64
           +V IVTG ASG GK + +   K    ++IAD+N E G K V +L+ LGG   F++ DV+
Sbjct: 5  NKVSIVTGSASGFGKGIAELFSKEGAKLIIADINQEAGEKVVYDLKNLGGEAEFIKTDVS 64

Query: 65 DGPAV 69
          +  ++
Sbjct: 65 NSDSM 69


>ref|NP_566798.1| short-chain dehydrogenase/reductase (SDR) family protein
          [Arabidopsis thaliana]
 dbj|BAB01223.1| alcohol dehydrogenase-like protein [Arabidopsis thaliana]
 gb|AAN28794.1| At3g26770/MDJ14_21 [Arabidopsis thaliana]
          Length = 306

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 6  RVGIVTGGASGIGKALCKELLKRRVYIVIADLNAEEGVKTVAELEGLGGACRFVQVDV 63
          +V ++TGGASG+GKA   E L+    +VIADL+AE G KT  E   LG    FV+ DV
Sbjct: 44 KVALITGGASGLGKATASEFLRHGARVVIADLDAETGTKTAKE---LGSEAEFVRCDV 98


>gb|AAK97686.1| AT3g26770/MDJ14_21 [Arabidopsis thaliana]
          Length = 306

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 37/58 (63%), Gaps = 3/58 (5%)

Query: 6  RVGIVTGGASGIGKALCKELLKRRVYIVIADLNAEEGVKTVAELEGLGGACRFVQVDV 63
          +V ++TGGASG+GKA   E L+    +VIADL+AE G KT  E   LG    FV+ DV
Sbjct: 44 KVALITGGASGLGKATASEFLRHGARVVIADLDAETGTKTAKE---LGSEAEFVRCDV 98


>gb|AAN64238.1| ORFUP [Sphingomonas paucimobilis]
          Length = 250

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 38/60 (63%)

Query: 6  RVGIVTGGASGIGKALCKELLKRRVYIVIADLNAEEGVKTVAELEGLGGACRFVQVDVAD 65
          +V +VTG ASG+G A  +   K    +V+ADLN E G K VAE++  GG   FV++D+ D
Sbjct: 8  KVALVTGAASGLGAAQARLFAKEGAKVVVADLNVEMGNKVVAEIQESGGEALFVRLDITD 67


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.139    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 233,498,498
Number of extensions: 8118840
Number of successful extensions: 31624
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 31847
Number of HSP's successfully gapped: 27
Length of query: 179
Length of database: 757,237,578
Length adjustment: 118
Effective length of query: 61
Effective length of database: 436,855,896
Effective search space: 26648209656
Effective search space used: 26648209656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 122 (51.6 bits)