BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0049.p (228 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||T44696 hypothetical protein [imported] - Bacillus megateriu... 183 3e-45 ref|NP_390431.1| spoIIP [Bacillus subtilis] >gi|586020|sp|P37968... 176 5e-43 ref|NP_982225.1| stage II sporulation protein p [Bacillus cereus... 176 5e-43 ref|NP_655924.1| hypothetical protein predicted by GeneMark [Bac... 170 3e-41 ref|NP_978452.1| stage II sporulation protein P [Bacillus cereus... 168 1e-40 >pir||T44696 hypothetical protein [imported] - Bacillus megaterium emb|CAA04320.1| hypothetical protein [Bacillus megaterium] Length = 374 Score = 183 bits (465), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 141/220 (64%), Gaps = 8/220 (3%) Query: 2 KRILIYHSHPREAYNPLLGVESD-NPSSAVPSK-NVMLVGSYIAKRLEQRGIGTVHAQED 59 K IYH+H E+Y PLLG+E D + + AV SK N+ +V + + K LE +GIG Q + Sbjct: 157 KVFYIYHTHSWESYLPLLGLEGDPDANKAVDSKTNINMVANMLGKDLEAQGIGAEVDQTN 216 Query: 60 YATTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQ 117 + + WN SY SR ++ A++ ++++T ID+HRDS R TT IN KSYA+ Sbjct: 217 IGQKLKEKGWNTNQSYAMSRTVIETALTENRDLTYFIDLHRDSLRKDNTTIKINNKSYAK 276 Query: 118 VYFILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVL 177 V F+LG AN+N+++N A +H+ LEK YPG+SRG+ GK+ +G NG YNQ +S N++L Sbjct: 277 VVFVLGKANQNFEQNLKMAKALHEGLEKKYPGLSRGVIGKNKSSG-NGVYNQDVSRNAIL 335 Query: 178 IEVGGIDNSEDELKRTADILADAIADVYWNSHDAEKAAAP 217 IEVGG+DN+ DEL T L+D I+ YW AEK AP Sbjct: 336 IEVGGVDNNFDELTNTTKALSDVISQFYW---QAEKVDAP 372 >ref|NP_390431.1| spoIIP [Bacillus subtilis] sp|P37968|SP2P_BACSU Stage II sporulation protein P pir||A69713 septal wall dissolution protein spoIIP - Bacillus subtilis dbj|BAA04542.1| ORF78 protein [Bacillus subtilis] dbj|BAA12458.1| SpoIIP [Bacillus subtilis] emb|CAB14495.1| spoIIP [Bacillus subtilis subsp. subtilis str. 168] Length = 401 Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 147/228 (64%), Gaps = 10/228 (4%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSK-NVMLVGSYIAKRLEQRGIGTVHAQEDY 60 K + IYH+H E+Y PLL E+D P A SK NV LVG + LE +GIG + D Sbjct: 181 KVVFIYHTHNTESYLPLLKGETD-PDMARHSKANVTLVGDMFGQALESQGIGATVNKTDI 239 Query: 61 ATTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQV 118 + + N+ SY SR VK A+++++ + +IDIHRDS+R TTA I GKSYA+V Sbjct: 240 QSKLNKKGLNYARSYDESRPVVKDALASNKNLQYIIDIHRDSRRKKDTTATIKGKSYARV 299 Query: 119 YFILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLI 178 F++G +KN+++N A+++H+L+EK YPG+S G++ K S G+NG YNQ L+ ++L+ Sbjct: 300 AFVVGKKSKNFEENYKIASELHKLMEKKYPGLSTGVFSKGSP-GDNGVYNQDLTDRALLL 358 Query: 179 EVGGIDNSEDELKRTADILADAIADVYWNSHDAEKAAAPESGADTVKQ 226 E GG+DN+ +EL+R A+ AD +++YW DAEK A + +T KQ Sbjct: 359 EFGGVDNNLEELQRAANAAADVFSEMYW---DAEKVNA--ASGETKKQ 401 >ref|NP_982225.1| stage II sporulation protein p [Bacillus cereus ATCC 10987] gb|AAS45067.1| stage II sporulation protein p [Bacillus cereus ATCC 10987] Length = 374 Score = 176 bits (445), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 138/206 (66%), Gaps = 3/206 (1%) Query: 2 KRILIYHSHPREAYNPLLGVESDNPSSAVPSKNVMLVGSYIAKRLEQRGIGTVHAQEDYA 61 K I IYHSH RE++ PLL +D +++ NV L+G + +LE++GIG ++ ++D Sbjct: 165 KSIFIYHSHSRESFLPLLPGTTDPNAASSDKVNVSLLGDRLKIKLEEKGIGAINNKKDIV 224 Query: 62 TTVPDYNWNF--SYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQVY 119 + ++ SY SR V+ ++ ++++ ++DIHRDS R TT +INGKSY ++Y Sbjct: 225 DMLLKRGLSYPSSYNVSREVVQETLAQNRDIQYLVDIHRDSSRKPLTTKMINGKSYGRLY 284 Query: 120 FILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLIE 179 F++G NK+++++ FA I+ L+K+Y G+SRGI+ K G NG YNQ LSP+++L+E Sbjct: 285 FVVGKENKHFQQSLQFAKAINSYLDKNYYGISRGIFVKDRREG-NGVYNQDLSPHAMLVE 343 Query: 180 VGGIDNSEDELKRTADILADAIADVY 205 +GG+DN+ DEL RT DILA+AI D Y Sbjct: 344 IGGVDNNLDELNRTVDILAEAINDYY 369 >ref|NP_655924.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] ref|NP_844468.1| stage II sporulation protein P [Bacillus anthracis str. Ames] gb|AAP25954.1| stage II sporulation protein P [Bacillus anthracis str. Ames] Length = 384 Score = 170 bits (430), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 128/209 (61%), Gaps = 5/209 (2%) Query: 5 LIYHSHPREAYNPLLGVESD-NPSSAVPS-KNVMLVGSYIAKRLEQRGIGTVHAQEDYAT 62 IYHSH E+Y PLL + +D NP+ A S N+ +VG ++L GIG + + D Sbjct: 173 FIYHSHSWESYLPLLNLTNDPNPNKATSSVTNISIVGDRFREQLANEGIGATNDKTDVGQ 232 Query: 63 TV--PDYNWNFSYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQVYF 120 + N N SYK SR V+ AM++++E+ D+HRDS R TT I KSYA++ F Sbjct: 233 KLISKGLNSNSSYKMSREIVQEAMTSNKELQYFFDLHRDSARKNVTTKAIGDKSYAKLAF 292 Query: 121 ILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLIEV 180 ++G NKN++KN A +H+ + K YPGVSRG+ K G NG YNQ LS ++LIEV Sbjct: 293 VIGKGNKNYEKNLQLATALHETINKKYPGVSRGVIQKGFQTG-NGVYNQDLSGQAILIEV 351 Query: 181 GGIDNSEDELKRTADILADAIADVYWNSH 209 GG+DN+E+EL R+ D+LA A + +W + Sbjct: 352 GGVDNTEEELNRSIDVLAKAFGEYFWQAE 380 >ref|NP_978452.1| stage II sporulation protein P [Bacillus cereus ATCC 10987] gb|AAS41060.1| stage II sporulation protein P [Bacillus cereus ATCC 10987] Length = 384 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 90/209 (43%), Positives = 127/209 (60%), Gaps = 5/209 (2%) Query: 5 LIYHSHPREAYNPLLGVESD-NPSSAVPS-KNVMLVGSYIAKRLEQRGIGTVHAQEDYAT 62 IYHSH E+Y PLL + +D NP+ A S N+ +VG ++L GIG + + D Sbjct: 173 FIYHSHSWESYLPLLNLTNDPNPNKATSSVTNISIVGDRFREQLANEGIGATNDKTDVGQ 232 Query: 63 TV--PDYNWNFSYKYSRMTVKAAMSTHQEMTEMIDIHRDSQRHGKTTAVINGKSYAQVYF 120 + N N SYK SR V+ AM+ ++E+ D+HRDS R TT +I KSYA++ F Sbjct: 233 KLISKGLNSNSSYKMSREIVQEAMAGNKELQYFFDLHRDSARKNVTTKIIGDKSYAKLAF 292 Query: 121 ILGHANKNWKKNEAFANKIHQLLEKSYPGVSRGIWGKSSGNGNNGEYNQTLSPNSVLIEV 180 ++G NKN++KN A +H+ + K YPGVSRG+ K G NG YNQ LS ++LIEV Sbjct: 293 VVGKGNKNYEKNLQLATALHETISKKYPGVSRGVIQKGFQTG-NGVYNQDLSGQAILIEV 351 Query: 181 GGIDNSEDELKRTADILADAIADVYWNSH 209 GG+DN+E+EL R+ D LA A + +W + Sbjct: 352 GGVDNTEEELNRSIDALAKAFGEYFWQAE 380 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.127 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 355,872,720 Number of extensions: 14656993 Number of successful extensions: 29630 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 29576 Number of HSP's successfully gapped: 22 Length of query: 228 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 107 Effective length of database: 428,710,599 Effective search space: 45872034093 Effective search space used: 45872034093 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 124 (52.4 bits)