BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0043.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242203.1| BH1337~unknown conserved protein [Bacillus halo... 238 1e-61 ref|NP_834033.1| DNA polymerase III, delta subunit [Bacillus cer... 230 4e-59 ref|NP_980697.1| conserved hypothetical protein [Bacillus cereus... 229 5e-59 ref|NP_846771.1| conserved hypothetical protein [Bacillus anthra... 229 5e-59 ref|NP_390434.1| similar to hypothetical proteins [Bacillus subt... 229 8e-59 >ref|NP_242203.1| BH1337~unknown conserved protein [Bacillus halodurans] pir||A83817 hypothetical protein BH1337 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05056.1| BH1337~unknown conserved protein [Bacillus halodurans] Length = 342 Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 202/332 (60%), Gaps = 2/332 (0%) Query: 8 KDIRQGKISPLYVLYGSEKFRMNEFAAFLEEHLIAKEDRDFAVIPFDLSETPVQAVVEEA 67 +D++ G+++P+Y +YG+E F M + + ++ E+RD V + L++ P++A +EEA Sbjct: 8 QDVQAGRVAPVYFMYGTELFLMEDLIQDILSVTLSDEERDMNVSSYSLTDVPIEAALEEA 67 Query: 68 ETVPFMVERKLLLVRDASLFTAGKDNAKIEHRVEVLSDYMQHPAEFSVIVFMVNSDKLDE 127 ETVPF +++++++DA+LFT+ K + +EH V+ L Y+ +P +V++ M +KLDE Sbjct: 68 ETVPFFGSKRVVILKDAALFTSQKLD--VEHDVKRLEQYILNPVPETVLLIMAPYEKLDE 125 Query: 128 RKKIVKTVKAAGTVLAFNPLGAEELLRWVEKGVRDRGCEPXXXXXXXXXXXXXXXXQGLS 187 RKKI K +K VL PL E W+ + E L+ Sbjct: 126 RKKITKLIKKESLVLEAKPLDEGEAKAWLSSLASELQVEMDEKAIETLLGMTGLRLTQLA 185 Query: 188 AEMDKLCLFAGKGGIVDAAAIESLVHRGTEQNVFTLVEDIANLRLDKALNTLYELLKQRE 247 +EM+KL L+ G+GGI+ + + LV + +QN+F L++ N R +AL+ +ELLKQ+E Sbjct: 186 SEMNKLALYVGEGGIIRSEDVTLLVAKTLDQNIFDLIDFAINQRTHQALSLYHELLKQKE 245 Query: 248 EPIKIAALIARQFRIILQVKDLSAQSYSQGQIASQLGLHPYAVKLAGEQARKFESQRLRQ 307 EP+K+ AL+ RQFRI+ QVK+L + Y+ Q+A L +HPY KLAG++A Q L Sbjct: 246 EPLKLLALLTRQFRIMYQVKELGRRGYTPNQMAKPLKIHPYVAKLAGKKAASMSDQLLYS 305 Query: 308 ILSFLADLDYQMKTGAIDKVLGLEMFMLRLGA 339 ++ AD ++ +K+G +DKVL LE+F+L +G+ Sbjct: 306 LIEKAADTEFAIKSGKVDKVLALELFLLTMGS 337 >ref|NP_834033.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 14579] gb|AAP11234.1| DNA polymerase III, delta subunit [Bacillus cereus ATCC 14579] Length = 336 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 195/331 (58%), Gaps = 2/331 (0%) Query: 8 KDIRQGKISPLYVLYGSEKFRMNEFAAFLEEHLIAKEDRDFAVIPFDLSETPVQAVVEEA 67 K I++ + +PLY+LYG+E F +NE + + +EDR+F V+ +DL E ++ VVE+A Sbjct: 6 KKIKKKQFAPLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEEAYLEDVVEDA 65 Query: 68 ETVPFMVERKLLLVRDASLFTAGKDNAKIEHRVEVLSDYMQHPAEFSVIVFMVNSDKLDE 127 T+PF ERK+LL++ T+ K+ K+E +++L +Y+ P+ FS++VF+ +KLDE Sbjct: 66 RTLPFFGERKVLLIKSPLFLTSQKE--KLEQNIKILEEYIGEPSPFSILVFVAPYEKLDE 123 Query: 128 RKKIVKTVKAAGTVLAFNPLGAEELLRWVEKGVRDRGCEPXXXXXXXXXXXXXXXXQGLS 187 RKKI K +K V+ N + +++ +W+ + L+ Sbjct: 124 RKKITKLLKKTADVVEANAMQIQDVQKWIVARADEVHVHIDNAAVSLLLELVGSNVTMLA 183 Query: 188 AEMDKLCLFAGKGGIVDAAAIESLVHRGTEQNVFTLVEDIANLRLDKALNTLYELLKQRE 247 EMDKL L+ G GG + + LV + EQNVF L E + + A+ L L Q+E Sbjct: 184 KEMDKLTLYVGMGGEITTKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQE 243 Query: 248 EPIKIAALIARQFRIILQVKDLSAQSYSQGQIASQLGLHPYAVKLAGEQARKFESQRLRQ 307 EPIK+ AL+ QFR++ QVK+L + Y Q QIAS +G+HPY VKLA Q + F + L++ Sbjct: 244 EPIKLLALLVSQFRLLYQVKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKK 303 Query: 308 ILSFLADLDYQMKTGAIDKVLGLEMFMLRLG 338 ++ LA+ DY MKTG +DK L LE F++RL Sbjct: 304 VIIELAEADYSMKTGKMDKKLVLEFFLMRLN 334 >ref|NP_980697.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43305.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 336 Score = 229 bits (585), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 195/331 (58%), Gaps = 2/331 (0%) Query: 8 KDIRQGKISPLYVLYGSEKFRMNEFAAFLEEHLIAKEDRDFAVIPFDLSETPVQAVVEEA 67 K I++ + +PLY+LYG+E F +NE + + +EDR+F V+ +DL E ++ VVE+A Sbjct: 6 KKIKKKQFAPLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEEAYLEDVVEDA 65 Query: 68 ETVPFMVERKLLLVRDASLFTAGKDNAKIEHRVEVLSDYMQHPAEFSVIVFMVNSDKLDE 127 T+PF ERK+LL++ T+ K+ K+E +++L +Y+ P+ FS++VF+ +KLDE Sbjct: 66 RTLPFFGERKVLLIKSPLFLTSQKE--KLEQNIKILEEYIGEPSPFSILVFVAPYEKLDE 123 Query: 128 RKKIVKTVKAAGTVLAFNPLGAEELLRWVEKGVRDRGCEPXXXXXXXXXXXXXXXXQGLS 187 RKKI K +K V+ N + +++ +W+ + L+ Sbjct: 124 RKKITKLLKKTADVVEANAMQVQDVQKWIVARADEVHVHIDHAAVSLLLELVGSNVTMLA 183 Query: 188 AEMDKLCLFAGKGGIVDAAAIESLVHRGTEQNVFTLVEDIANLRLDKALNTLYELLKQRE 247 EMDKL L+ G GG + + LV + EQNVF L E + + A+ L L Q+E Sbjct: 184 KEMDKLTLYVGMGGDITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQE 243 Query: 248 EPIKIAALIARQFRIILQVKDLSAQSYSQGQIASQLGLHPYAVKLAGEQARKFESQRLRQ 307 EPIK+ AL+ QFR++ QVK+L + Y Q QIAS +G+HPY VKLA Q + F + L++ Sbjct: 244 EPIKLLALLVSQFRLLHQVKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKK 303 Query: 308 ILSFLADLDYQMKTGAIDKVLGLEMFMLRLG 338 ++ LA+ DY MKTG +DK L LE F++RL Sbjct: 304 VIMELAEADYSMKTGKMDKKLVLEFFLMRLN 334 >ref|NP_846771.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP28257.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 336 Score = 229 bits (585), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 125/331 (37%), Positives = 195/331 (58%), Gaps = 2/331 (0%) Query: 8 KDIRQGKISPLYVLYGSEKFRMNEFAAFLEEHLIAKEDRDFAVIPFDLSETPVQAVVEEA 67 K I++ + +PLY+LYG+E F +NE + + +EDR+F V+ +DL E ++ VVE+A Sbjct: 6 KKIKKKQFAPLYLLYGTEAFFINETIKLITTEALEEEDREFNVVTYDLEEAYLEDVVEDA 65 Query: 68 ETVPFMVERKLLLVRDASLFTAGKDNAKIEHRVEVLSDYMQHPAEFSVIVFMVNSDKLDE 127 T+PF ERK+LL++ T+ K+ K+E +++L +Y+ P+ FS++VF+ +KLDE Sbjct: 66 RTLPFFGERKVLLIKSPLFLTSQKE--KLEQNIKILEEYIGEPSPFSILVFVAPYEKLDE 123 Query: 128 RKKIVKTVKAAGTVLAFNPLGAEELLRWVEKGVRDRGCEPXXXXXXXXXXXXXXXXQGLS 187 RKKI K +K ++ N + +++ +W+ + L+ Sbjct: 124 RKKITKLLKKTADIVEANAMQVQDVQKWIVARAEEGHVHIDNAAVSLLLELVGSNVTMLA 183 Query: 188 AEMDKLCLFAGKGGIVDAAAIESLVHRGTEQNVFTLVEDIANLRLDKALNTLYELLKQRE 247 EMDKL L+ G GG + + LV + EQNVF L E + + A+ L L Q+E Sbjct: 184 KEMDKLTLYVGMGGEITPKLVAELVPKSVEQNVFALTEKVVKKDIAGAMQILDGLFTQQE 243 Query: 248 EPIKIAALIARQFRIILQVKDLSAQSYSQGQIASQLGLHPYAVKLAGEQARKFESQRLRQ 307 EPIK+ AL+ QFR++ QVK+L + Y Q QIAS +G+HPY VKLA Q + F + L++ Sbjct: 244 EPIKLLALLVSQFRLLHQVKELQQRGYGQNQIASHIGVHPYRVKLAMNQTKFFSFEELKK 303 Query: 308 ILSFLADLDYQMKTGAIDKVLGLEMFMLRLG 338 ++ LA+ DY MKTG +DK L LE F++RL Sbjct: 304 VIIELAEADYSMKTGKMDKKLVLEFFLMRLN 334 >ref|NP_390434.1| similar to hypothetical proteins [Bacillus subtilis] sp|P54459|YQEN_BACSU Hypothetical protein yqeN pir||B69952 conserved hypothetical protein yqeN - Bacillus subtilis dbj|BAA12455.1| YqeN [Bacillus subtilis] emb|CAB14498.1| yqeN [Bacillus subtilis subsp. subtilis str. 168] Length = 347 Score = 229 bits (583), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 179/319 (56%) Query: 8 KDIRQGKISPLYVLYGSEKFRMNEFAAFLEEHLIAKEDRDFAVIPFDLSETPVQAVVEEA 67 K +++G++ P+Y LYG E + + E + + + ++ +E +DF + FDL E P+ + +A Sbjct: 7 KSLKKGEVHPVYCLYGKETYLLQETVSRIRQTVVDQETKDFNLSVFDLEEDPLDQAIADA 66 Query: 68 ETVPFMVERKLLLVRDASLFTAGKDNAKIEHRVEVLSDYMQHPAEFSVIVFMVNSDKLDE 127 ET PFM ER+L++V++ T K KIEH V L Y+Q PA ++V V + +KLDE Sbjct: 67 ETFPFMGERRLVIVKNPYFLTGEKKKEKIEHNVSALESYIQSPAPYTVFVLLAPYEKLDE 126 Query: 128 RKKIVKTVKAAGTVLAFNPLGAEELLRWVEKGVRDRGCEPXXXXXXXXXXXXXXXXQGLS 187 RKK+ K +K ++ L A+E + + + Sbjct: 127 RKKLTKALKKHAFMMEAKELNAKETTDFTVNLAKTEQKTIGTEAAEHLVLLVNGHLSSIF 186 Query: 188 AEMDKLCLFAGKGGIVDAAAIESLVHRGTEQNVFTLVEDIANLRLDKALNTLYELLKQRE 247 E+ KLC F G + ++ LV R EQN+F L+ I N + ++L Y+LLKQ E Sbjct: 187 QEIQKLCTFIGDREEITLDDVKMLVARSLEQNIFELINKIVNRKRTESLQIFYDLLKQNE 246 Query: 248 EPIKIAALIARQFRIILQVKDLSAQSYSQGQIASQLGLHPYAVKLAGEQARKFESQRLRQ 307 EPIKI ALI+ QFR+ILQ K + Q Y Q QIAS L +HP+ VKLA +QAR F + LR Sbjct: 247 EPIKIMALISNQFRLILQTKYFAEQGYGQKQIASNLKVHPFRVKLAMDQARLFSEEELRL 306 Query: 308 ILSFLADLDYQMKTGAIDK 326 I+ LA +DY+MKTG DK Sbjct: 307 IIEQLAVMDYEMKTGKKDK 325 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.136 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 406,032,507 Number of extensions: 14497290 Number of successful extensions: 37482 Number of sequences better than 1.0e-05: 72 Number of HSP's gapped: 37420 Number of HSP's successfully gapped: 73 Length of query: 339 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 213 Effective length of database: 415,135,104 Effective search space: 88423777152 Effective search space used: 88423777152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)