BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0038.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAE11236.1| EndR protein [Bacillus amyloliquefaciens] 311 1e-83 sp|P27871|ENDR_PAEPO Probable HTH-type transcriptional regulator... 307 2e-82 ref|NP_693626.1| transcriptional regulator [Oceanobacillus iheye... 300 5e-80 ref|ZP_00186316.1| hypothetical protein Rxyl285901 [Rubrobacter ... 190 4e-47 ref|NP_621898.1| Transcriptional regulator [Thermoanaerobacter t... 190 5e-47 >emb|CAE11236.1| EndR protein [Bacillus amyloliquefaciens] Length = 333 Score = 311 bits (798), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/333 (45%), Positives = 218/333 (65%), Gaps = 1/333 (0%) Query: 19 MKKLTIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIAEVIEELNYQPNGLARSLKQN 78 MK +TI DVA+ A VSKSTVSQFLN+R+ YMSE TK +I I+ELNYQPN +ARSLKQ Sbjct: 1 MKTITISDVAKYANVSKSTVSQFLNQRYDYMSEKTKQKIEAAIQELNYQPNFVARSLKQK 60 Query: 79 RTHMVGIIVANIDYSLSVQCIRAIENELQRHGIQVIICNSDENADKENTHVEALVARQVD 138 T VG++VANI ++ S Q IRA+E+ G +I+CN+D+ +KE ++E L A+QVD Sbjct: 61 STFTVGVVVANILHTFSTQVIRAVEDYFHEQGFHIIVCNADDEPEKEKKYIEMLRAKQVD 120 Query: 139 GLIIFPAGDNPSPYSRLIEAEYPLVFMDRLVEGITTQSLLLDNEMAVKTAIKELTGKGHE 198 G+IIFP G+N S Y ++ +P+VFMDR +E + +++LDN A A+ G + Sbjct: 121 GIIIFPTGENLSLYEKMKRDTFPVVFMDRTIEELGIPTVMLDNHHAAGLAVDRFIESGIK 180 Query: 199 AIAILSLPLGEHAITPRKERMSGYKKAMEEAGLAMNDRYVRSVPREAIASALDELLILPQ 258 IAI++ + I+PR ER+ GYKKA++ G+ + D Y+++ I++ L EL L + Sbjct: 181 RIAIITTSIIRE-ISPRVERIEGYKKALDRHGMMVRDEYIKTADAADISNVLSELFSLEE 239 Query: 259 PPTALLAANDLVLGEILKYANRHSITIPGQLSVIGIDDAEFARIYNPAITTIRQPAYEMG 318 PP A+LAAND+VL E+LKY H +TIP + +VIGID+ FA + P ITTI QPA EM Sbjct: 240 PPKAILAANDIVLVEVLKYMKEHDMTIPDKAAVIGIDEVPFAGFFTPPITTIVQPAAEMA 299 Query: 319 MQAAKIMLSLIEAQEAAVPITYRFPPALQQGQS 351 +A ++L I+ ++ +R+ P L QS Sbjct: 300 RKAGSLLLRQIQEKDGGEKRIHRYKPVLLARQS 332 >sp|P27871|ENDR_PAEPO Probable HTH-type transcriptional regulator endR Length = 340 Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 143/333 (42%), Positives = 227/333 (68%), Gaps = 3/333 (0%) Query: 23 TIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIAEVIEELNYQPNGLARSLKQNRTHM 82 T+++VA++AGVSKSTVSQFL KR+ YMSE TK +I + IE+L+Y PN +ARSLKQ +T + Sbjct: 4 TMKEVAERAGVSKSTVSQFLQKRYNYMSENTKKKIEQAIEDLSYIPNEVARSLKQKKTFI 63 Query: 83 VGIIVANIDYSLSVQCIRAIENELQRHGIQVIICNSDENADKENTHVEALVARQVDGLII 142 VG+I + I + + +RAIE+E Q +QVI+CN+D+++ KE +V++++ARQVDGLII Sbjct: 64 VGVISSTILSRFTTEVVRAIEDECQLENVQVIVCNTDDDSLKEKKYVQSMIARQVDGLII 123 Query: 143 FPAGDNPSPYSRLIEAEYPLVFMDRLVEGITTQSLLLDNEMAVKTAIKELTGKGHEAIAI 202 FP +N Y L++ YP VF+DR ++ ++ ++LL+NE A + ++ L GH I I Sbjct: 124 FPTEENKKLYVSLVKNGYPFVFVDRKIDELSVDTVLLNNEKASRACVEALIEHGHNNIGI 183 Query: 203 LSLPLGEHAITPRKERMSGYKKAMEEAGLAMNDRYVRSVPREAIASALDELLILPQPPTA 262 ++ PLG+ AIT R ER+SGY+ + + + +N+ Y++S + + + + +L + PPTA Sbjct: 184 ITFPLGKKAITTRSERLSGYRNTLGKHDIPVNENYIKSGRLDEMPNLIGQLFHMENPPTA 243 Query: 263 LLAANDLVLGEILKYANRHSITIPGQLSVIGIDDAEFARIYNPAITTIRQPAYEMGMQAA 322 ++A ND++L ++L YA + +TIP S+IGIDD FA YNP ITT+ QP++EMG ++A Sbjct: 244 IIATNDMILEQVLIYAKNNHLTIPNDFSLIGIDDVSFASFYNPPITTVSQPSFEMGKRSA 303 Query: 323 KIMLSLIEAQEA---AVPITYRFPPALQQGQSV 352 +++L I+ +E + R P + +SV Sbjct: 304 RLLLEKIDQKEQDHEELSEIIRMNPVINHRESV 336 >ref|NP_693626.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] dbj|BAC14661.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 333 Score = 300 bits (767), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 152/334 (45%), Positives = 219/334 (65%), Gaps = 4/334 (1%) Query: 20 KKLTIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIAEVIEELNYQPNGLARSLKQNR 79 K++TI DVA AGVSKSTVSQ+LN R+ YM + TK +I I+EL Y PN +ARSLKQ Sbjct: 3 KRITISDVAIHAGVSKSTVSQYLNGRYDYMGQKTKEKIQSAIKELKYSPNMVARSLKQKS 62 Query: 80 THMVGIIVANIDYSLSVQCIRAIENELQRHGIQVIICNSDENADKENTHVEALVARQVDG 139 + +G+IVANI + S Q IRAIE+ G VI+CN+D+N DKE T+++ L A+QVDG Sbjct: 63 STTIGVIVANILHVFSTQVIRAIEDFCHEKGFHVIVCNADDNPDKEKTYIDMLRAKQVDG 122 Query: 140 LIIFPAGDNPSPYSRLIEAEYPLVFMDRLVEGITTQSLLLDNEMAVKTAIKELTGKGHEA 199 +I FP GDN + Y L+E +YPLVFMDRLV+G+ ++LLDN+ A A+ L K ++ Sbjct: 123 IIAFPTGDNVALYQGLLEEQYPLVFMDRLVDGLDIPTVLLDNDKAATLAVDLL--KDYQR 180 Query: 200 IAILSLPLGEHAITPRKERMSGYKKAMEEAGLAMNDRYVRSVPREAIASALDELLILPQP 259 AI++ PL E+ +TPR ER+ G+K + + G+++ D Y+ I L EL L + Sbjct: 181 PAIVTPPLKEN-LTPRMERLIGFKNELAKHGVSLPDEYIACGEISEIQKKLTELFQLTKA 239 Query: 260 PTALLAANDLVLGEILKYANRHSITIPGQLSVIGIDDAEFARIYNPAITTIRQPAYEMGM 319 P A+ A ND VL E+L + N I IP ++++ +DD FA Y PA+TTI QPA+EMG Sbjct: 240 PDAIFAINDRVLHEVLTFMNHQHIRIPEDVALVNVDDVSFAEFYQPALTTISQPAFEMGK 299 Query: 320 QAAKIMLSLIE-AQEAAVPITYRFPPALQQGQSV 352 +AA+++ + I+ Q+ + T+RF P + + +S Sbjct: 300 KAAELLFTQIKNPQDRSTMETFRFEPMVNRRKSC 333 >ref|ZP_00186316.1| hypothetical protein Rxyl285901 [Rubrobacter xylanophilus DSM 9941] Length = 332 Score = 190 bits (483), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 189/337 (56%), Gaps = 9/337 (2%) Query: 22 LTIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIAEVIEELNYQPNGLARSLKQNRTH 81 +T+ DVA++AGVS TVS+ +N + E T R++EV+ L Y+PN LARSLK R+ Sbjct: 1 MTLRDVAREAGVSIKTVSRVVNGEREVNPE-TAARVSEVLSRLRYRPNELARSLKGRRSR 59 Query: 82 MVGIIVANIDYSLSVQCIRAIENELQRHGIQVIICNSDENADKENTHVEALVARQVDGLI 141 +G+++A+I C +A+E + G VI+C S E+A E +V+ LV R+V+GL+ Sbjct: 60 TIGLMIADISNPFYSGCAKAVEEVARERGYAVILCASAEDARTEREYVDLLVQRRVEGLL 119 Query: 142 IFPAGDNPSPYSRLIEAEYPLVFMDRLVEGITTQSLLLDNEMAVKTAIKELTGKGHEAIA 201 + PA D + A +V +DR + G+ T ++++ N + A++ L GH IA Sbjct: 120 LVPAADGHEYLRQEQTAGLAVVALDRPIAGLPTDAVIVQNRAGTRRAVQHLIEHGHRRIA 179 Query: 202 ILSLPLGEHAITPRKERMSGYKKAMEEAGLAMNDRYVRSVPREAIASA--LDELLILPQP 259 + G+ T RK R+ GY++A+ EAGL + VR +A ++A + ELL L P Sbjct: 180 FVG--AGKGLYTTRK-RLEGYREALREAGL---EELVRLEAPDASSAAGRMRELLALNTP 233 Query: 260 PTALLAANDLVLGEILKYANRHSITIPGQLSVIGIDDAEFARIYNPAITTIRQPAYEMGM 319 PTA+ AAN+L+ +L+ R +P ++++G DD A + P +T +RQPA E+G Sbjct: 234 PTAVFAANNLITLGVLQALERAGARVPEDVALVGFDDFALAAVLRPRLTLVRQPADELGR 293 Query: 320 QAAKIMLSLIEAQEAAVPITYRFPPALQQGQSVQAPP 356 +AA++++ +E + P P L +S P Sbjct: 294 RAARLLIDRLENKLPPTPRRIVLPTELIIRESCGCQP 330 >ref|NP_621898.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] gb|AAM23502.1| Transcriptional regulator [Thermoanaerobacter tengcongensis] Length = 338 Score = 190 bits (482), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 189/340 (55%), Gaps = 9/340 (2%) Query: 22 LTIEDVAQKAGVSKSTVSQFLNKRFKYMSEATKNRIAEVIEELNYQPNGLARSLKQNRTH 81 +TI+D+A+ A VS +TVS+ +N + + +SE T+ +I ++++EL YQPN +AR L +T Sbjct: 3 VTIKDIARLANVSVTTVSRVINNKPEGVSEETRQKILKLVKELGYQPNAIARGLVTKKTK 62 Query: 82 MVGIIVANIDYSLSVQCIRAIENELQRHGIQVIICNSDENADKENTHVEALVARQVDGLI 141 +G+I+ +I R +E+ +G V +CN+D+N +KE+ ++ AL + VDG I Sbjct: 63 TIGLIIPDISNPFFPDIARGVEDSAHIYGYNVFLCNTDDNLEKESEYIRALKEKYVDG-I 121 Query: 142 IFPAGDNPSPYS--RLIEAEYPLVFMDRLVEGITTQSLLLDNEMAVKTAIKELTGKGHEA 199 IF + P L+E+ P+V MDR V+ + LDN A K L GHE Sbjct: 122 IFTSSSIPKHEHIIELVESGIPVVIMDRRVDSENIYGVFLDNYEGGYIATKHLIDLGHEK 181 Query: 200 IAILSLPLGEHAITPRKERMSGYKKAMEEAGLAMNDRYVRSVPREAIASAL--DELLILP 257 I ++ PL + KER+ GYKKA+ ++G+ ++++ + + + + LL Sbjct: 182 IGCITGPLYTKS---AKERLEGYKKALLDSGIKIDEKLIFEGDYKINGGIIGAERLLKDN 238 Query: 258 QPPTALLAANDLVLGEILKYANRHSITIPGQLSVIGIDDAEFARIYNPAITTIRQPAYEM 317 + +A+ A NDL+ K IP +SV+G DD + ++I P ++TI+QPAY+M Sbjct: 239 KDMSAIFACNDLMAYGAYKTIRSFGYKIPDDISVVGFDDIQLSQILEPQLSTIKQPAYDM 298 Query: 318 GMQAAKIMLSLIEAQEAAVPITYRFPPALQQGQSVQAPPG 357 G+ AA++++ LIE ++ I F P L QS + G Sbjct: 299 GLTAARMLIKLIEGKKLKKKII-NFRPQLVIRQSTKLVKG 337 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 498,329,787 Number of extensions: 18922545 Number of successful extensions: 62864 Number of sequences better than 1.0e-05: 1128 Number of HSP's gapped: 60721 Number of HSP's successfully gapped: 1128 Length of query: 359 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 232 Effective length of database: 412,420,005 Effective search space: 95681441160 Effective search space used: 95681441160 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)