BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0029.p (183 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_488607.1| transcriptional regulator [Nostoc sp. PCC 7120]... 154 8e-37 ref|ZP_00107598.1| COG1309: Transcriptional regulator [Nostoc pu... 152 4e-36 ref|ZP_00017740.1| hypothetical protein [Chloroflexus aurantiacus] 140 1e-32 gb|AAQ87479.1| Transcriptional regulator, TetR family [Rhizobium... 135 3e-31 ref|NP_831591.1| Transcriptional regulator, TetR family [Bacillu... 134 8e-31 >ref|NP_488607.1| transcriptional regulator [Nostoc sp. PCC 7120] pir||AG2376 transcription regulator alr4567 [imported] - Nostoc sp. (strain PCC 7120) dbj|BAB76266.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 201 Score = 154 bits (389), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 71/173 (41%), Positives = 111/173 (64%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M KG+ T+ I+ ++AELFNQ+GYAGSS++D Y HF SKDE+AL+A++Y Sbjct: 1 MSKGEETKTRILQQAAELFNQQGYAGSSISDIMRVTGLQKGGIYNHFQSKDELALQAFDY 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A ++ + A+ + +A R+ A V+ PP GGCPL NTA ESDD HP+LR Sbjct: 61 AIASISKHYRIALRSKRNAIERVQALIAVFSSFAENPPIPGGCPLLNTAVESDDAHPALR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKL 173 ++ Q+ M++ L+M+++II GI GE + V+ + +A+ ++ LEG I++S+L Sbjct: 121 ERTQQAMNSWLNMIRRIIQTGIERGEIEPHVNAEEIATIIVATLEGAIMMSQL 173 >ref|ZP_00107598.1| COG1309: Transcriptional regulator [Nostoc punctiforme] Length = 195 Score = 152 bits (383), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/175 (41%), Positives = 108/175 (61%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M KG+ T+ I+ ++AELFNQ+GYAGSS++D Y HF SKD++AL+A+++ Sbjct: 1 MSKGEETKSRILHQAAELFNQQGYAGSSMSDIMRVTGLQKGGIYNHFQSKDDLALQAFDF 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 A + A+ + A RL A ++ PP GGCPL NTA ESDD HP+LR Sbjct: 61 AIARIKQHTRFALRSKRHAVERLQAIIGIFSSFAENPPIKGGCPLLNTAVESDDAHPALR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKLEG 175 + AQ+ M++ L ++++II GI GE + +V D +A+ ++ LEG I++SKL G Sbjct: 121 EHAQQAMNSWLHLIRRIIETGIAKGEIRSEVSADEIATIIIATLEGAIMMSKLYG 175 >ref|ZP_00017740.1| hypothetical protein [Chloroflexus aurantiacus] Length = 198 Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 62/173 (35%), Positives = 104/173 (60%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M+KG TRE ++ ++A LFN GYAG++++D YRHF SK+++AL A++Y Sbjct: 1 MRKGQETRERVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDY 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 AA V RF+ + + ++AF V+ PP +GGCP+ NTA ESDDT+P LR Sbjct: 61 AAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERPPLVGGCPILNTAIESDDTNPMLR 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKL 173 ++ + + + ++ ++ GI GE + +VD D LA ++ +EG ++L+++ Sbjct: 121 ERVRAVIDEWRETIRTLVQTGIARGEIRPEVDADRLALLIIATMEGAVMLARI 173 >gb|AAQ87479.1| Transcriptional regulator, TetR family [Rhizobium sp. NGR234] Length = 255 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/182 (37%), Positives = 106/182 (58%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 MKK +RTR++I+ K+A +FN +GYAG+S+ D Y +F +KDE+AL A+ + Sbjct: 61 MKKSERTRQFIVEKTAPIFNVKGYAGTSIADMTEATGLTKGSIYGNFANKDEVALAAFEH 120 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 V +DK ++ RLLA VY+D+ + GGCPL NTA E+D THP LR Sbjct: 121 NWQRVKTTVRAEMDKRSTSKDRLLALVGVYQDLQSHDFPQGGCPLLNTAVEADGTHPDLR 180 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKLEGSXXXX 180 +KA+ + L + ++ G+ GEF+ VD + A ++L+EGG+++S+L G+ Sbjct: 181 EKARDAFNGWLKNIVTVVETGVAAGEFRASVDAEQTALTLIALIEGGLMISQLTGNVGHR 240 Query: 181 TC 182 T Sbjct: 241 TA 242 >ref|NP_831591.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP08792.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 196 Score = 134 bits (338), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 68/173 (39%), Positives = 99/173 (57%) Query: 1 MKKGDRTREYIIMKSAELFNQRGYAGSSLNDXXXXXXXXXXXXYRHFGSKDEIALEAYNY 60 M K D+ +E II S LFN G +S+ D YR F SK+EI L AY+ Sbjct: 1 MTKVDKIKEKIIETSLYLFNTNGITRTSIQDIMTATELPKGSIYRRFKSKEEIVLAAYDK 60 Query: 61 AANVVNGRFSEAIDKEESAAGRLLAFFHVYEDVVNTPPFIGGCPLQNTATESDDTHPSLR 120 + ++ F +A++ +++A ++LA F VY+D N PP GGCPL N+A ES P L+ Sbjct: 61 SGEIMWSHFHKAMENKKTAIDKILAIFLVYQDAANNPPIAGGCPLLNSAIESTGVFPELQ 120 Query: 121 DKAQRGMHNTLDMMKQIIYEGIRTGEFKEDVDPDTLASFALSLLEGGILLSKL 173 A +G +T+ +M +I EGI E KED+D +LASF S +EG I+ S++ Sbjct: 121 KAAAKGYDDTVMLMASLIKEGIEKQELKEDIDIISLASFLASSMEGAIMASRV 173 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 235,364,420 Number of extensions: 8260270 Number of successful extensions: 17835 Number of sequences better than 1.0e-05: 34 Number of HSP's gapped: 17940 Number of HSP's successfully gapped: 34 Length of query: 183 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 65 Effective length of database: 436,855,896 Effective search space: 28395633240 Effective search space used: 28395633240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 122 (51.6 bits)