BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0026.p (174 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00180292.1| hypothetical protein Mther179701 [Moorella th... 125 3e-28 gb|EAD86045.1| unknown [environmental sequence] 113 1e-24 gb|EAJ03280.1| unknown [environmental sequence] 111 9e-24 gb|EAH87684.1| unknown [environmental sequence] 110 1e-23 ref|NP_046853.1| putative deoxycytidinylate deaminase; gp36.1 [M... 110 2e-23 >ref|ZP_00180292.1| hypothetical protein Mther179701 [Moorella thermoacetica ATCC 39073] Length = 135 Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 84/136 (61%), Gaps = 16/136 (11%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 RK WD YF+DIA V++RS C R VGAV+V+ K++ GT YNGAP G+P C E GC Sbjct: 2 RKEWDEYFLDIAFQVASRSTCNRLAVGAVVVKDKRIKGTGYNGAPHGLPHCLEVGC---- 57 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANMLANS 127 +++ + C+RTIHAE N LL +R+G+T+YVTD PC CA ++ S Sbjct: 58 ------------LMEGEHCLRTIHAEINALLECSPEERQGATMYVTDYPCERCALVIVQS 105 Query: 128 GIVEIVYLRPYRKDME 143 GI +VY RPY + + Sbjct: 106 GIKRLVYARPYHVNHD 121 >gb|EAD86045.1| unknown [environmental sequence] Length = 146 Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 89/157 (56%), Gaps = 20/157 (12%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 R +W+TYFM+IA VSTRS C R+HVGAV+V+ K +L T YNG+ G+P C E GC Sbjct: 5 RVSWNTYFMNIAREVSTRSTCSRKHVGAVIVRNKTILSTGYNGSIKGLPHCDEVGC---- 60 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRS--DREGSTVYVTDEPCWTCANMLA 125 E+V G CIRT HAE N ++ ++ +GS ++VT PC+ C ++A Sbjct: 61 ----EMVEG--------HCIRTTHAEANAIVQAAKNGVKVDGSEIHVTASPCYNCFKLIA 108 Query: 126 NSGIVEIVYLRPYRKDMEKVEAMLASKGIIFRQLENY 162 N+GI I Y YR E++ GI LE++ Sbjct: 109 NAGIKIIYYDELYRD--ERIIERAKEVGIKLISLEDH 143 >gb|EAJ03280.1| unknown [environmental sequence] Length = 142 Score = 111 bits (277), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 59/136 (43%), Positives = 80/136 (58%), Gaps = 18/136 (13%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 R +W TYFM+IA V+TRS C R+HVGAV+V+ K +L T YNG+ G+P C EAGC Sbjct: 5 RVSWGTYFMNIAQEVATRSTCDRKHVGAVIVRDKTILSTGYNGSIKGLPHCDEAGC---- 60 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDR--EGSTVYVTDEPCWTCANMLA 125 E+V G C+RT HAE N ++ ++ E S +YVT PC+ C ++A Sbjct: 61 ----EMVEG--------HCVRTTHAEANAIVQAAKNGVKIELSEIYVTASPCYNCFKLIA 108 Query: 126 NSGIVEIVYLRPYRKD 141 N+GI I Y YR + Sbjct: 109 NAGIKIIYYNELYRDE 124 >gb|EAH87684.1| unknown [environmental sequence] Length = 142 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 58/136 (42%), Positives = 80/136 (58%), Gaps = 18/136 (13%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 R +W+TYFM+IA V+TRS C R+HVGAV+V+ K +L T YNG+ G+P C EAG Sbjct: 5 RVSWETYFMNIAREVATRSTCDRKHVGAVIVRDKTILSTGYNGSIKGLPHCDEAG----- 59 Query: 68 QYERELVNGVETMVKKQRCIRTIHAEQNLLLFTDRSDR--EGSTVYVTDEPCWTCANMLA 125 E+V G C+RT HAE N ++ ++ + + +YVT PC+ C ++A Sbjct: 60 ---HEMVEG--------HCVRTTHAEANAIVQAAKNGVKIDSAEIYVTASPCYNCFKLIA 108 Query: 126 NSGIVEIVYLRPYRKD 141 NSGI I Y YR D Sbjct: 109 NSGIKIIYYHEFYRDD 124 >ref|NP_046853.1| putative deoxycytidinylate deaminase; gp36.1 [Mycobacteriophage D29] sp|O22000|DCTD_BPMD2 DEOXYCYTIDYLATE DEAMINASE (DCMP DEAMINASE) pir||C72804 probable deoxycytidinylate deaminase protein - Mycobacterium phage D29 gb|AAC18478.1| putative deoxycytidinylate deaminase; gp36.1 [Mycobacteriophage D29] Length = 128 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 7/128 (5%) Query: 8 RKNWDTYFMDIACMVSTRSRCPRRHVGAVLVQGKKLLGTAYNGAPMGVPDCSEAGCMVSE 67 R +WD YF+ IA + RS C R VGAV+V+ +++ GT YNGAP G AGC Sbjct: 3 RPDWDEYFLGIATAAAQRSDCERSKVGAVVVKDRRVRGTGYNGAPAGA-----AGCSTCP 57 Query: 68 QYERELVNGVETMVK-KQRCIRTIHAEQNLLLFTDRSDREGSTVYVTDEPCWTCANMLAN 126 + V GV RC+ +HAE N LL+ DR D G+T+YVT EPC+ C+N++A Sbjct: 58 RRLSGAVPGVSDYSSGATRCV-AVHAEANALLYCDREDLIGATLYVTREPCYACSNLIAA 116 Query: 127 SGIVEIVY 134 SGI +VY Sbjct: 117 SGIERVVY 124 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.134 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 236,618,353 Number of extensions: 8594640 Number of successful extensions: 17928 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 17741 Number of HSP's successfully gapped: 138 Length of query: 174 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 57 Effective length of database: 439,570,995 Effective search space: 25055546715 Effective search space used: 25055546715 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 121 (51.2 bits)