BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0010.p (285 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN05437.1| putative sugar permease [Thermus thermophilus] 269 5e-71 ref|ZP_00062335.1| COG0395: ABC-type sugar transport system, per... 232 6e-60 emb|CAB42552.1| sugar permease [Thermus thermophilus] 209 4e-53 ref|NP_630682.1| putative transmembrane sugar transport protein ... 200 3e-50 ref|NP_968137.1| ABC-type Maltose/ Maltodextrin permease [Bdello... 199 4e-50 >gb|AAN05437.1| putative sugar permease [Thermus thermophilus] Length = 280 Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 126/220 (57%), Positives = 172/220 (78%), Gaps = 7/220 (3%) Query: 72 YFRNSLLICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLM 131 Y +NS L+C TT+ A A A AGYALARF FPG++LF S++ TQ+IPGI+FL PIY+M Sbjct: 62 YLKNSFLVCSLTTVFALAVATFAGYALARFRFPGAELFGGSVLVTQVIPGILFLIPIYIM 121 Query: 132 FL----WIKNTFGLP--MINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDG 185 ++ W+++ GL ++ +Y G++ YTAF+ P+SIWI+RGFF SIP++LEE+A++DG Sbjct: 122 YIYVQNWVRSALGLEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPKELEEAAMVDG 181 Query: 186 CSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQY 245 + FQAF+++ILPL++PG+ AT ++IFLTAWDELLFA VLTT + T+PVGIR FVG Y Sbjct: 182 ATPFQAFHRVILPLALPGLAATAVYIFLTAWDELLFAQVLTTEATA-TVPVGIRNFVGNY 240 Query: 246 NTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 RYDL+MAA+TV T+PV+V+FF Q+ I G+TAGAVKG Sbjct: 241 QNRYDLVMAAATVATLPVLVLFFFVQRQLIQGLTAGAVKG 280 >ref|ZP_00062335.1| COG0395: ABC-type sugar transport system, permease component [Clostridium thermocellum ATCC 27405] Length = 177 Score = 232 bits (592), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 109/177 (61%), Positives = 142/177 (80%) Query: 109 FSMSIISTQLIPGIMFLFPIYLMFLWIKNTFGLPMINTYWGMILVYTAFYTPISIWIMRG 168 F + I++TQL+PG+MFL P+YL F+ IK G+ +IN+ G+++VY+AF+ P SIWI+RG Sbjct: 1 FGILILATQLLPGMMFLLPLYLDFVKIKQATGIQLINSIPGLVIVYSAFFVPFSIWIIRG 60 Query: 169 FFVSIPRDLEESAVIDGCSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTS 228 FF SIP +LEE+A IDGC+KF AF +++LPL+VPGI+AT I+IFLTAWDEL+FAWVL Sbjct: 61 FFASIPGELEEAARIDGCNKFTAFLRVMLPLAVPGIVATAIYIFLTAWDELIFAWVLLKD 120 Query: 229 SDVQTIPVGIRLFVGQYNTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 + V TIP GIR F+ RYDLLMAA T+VT+PV+++FF QK FISGMTAGAVKG Sbjct: 121 TKVTTIPAGIRGFIAYTTARYDLLMAAGTIVTIPVLIMFFTMQKKFISGMTAGAVKG 177 >emb|CAB42552.1| sugar permease [Thermus thermophilus] Length = 169 Score = 209 bits (533), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 97/170 (57%), Positives = 135/170 (79%), Gaps = 7/170 (4%) Query: 122 IMFLFPIYLMFL----WIKNTFGLP--MINTYWGMILVYTAFYTPISIWIMRGFFVSIPR 175 I+FL PIY+M++ W+++ GL ++ +Y G++ YTAF+ P+SIWI+RGFF SIP+ Sbjct: 1 ILFLIPIYIMYIYVQNWVRSALGLEVRLVGSYGGLVFTYTAFFVPLSIWILRGFFASIPK 60 Query: 176 DLEESAVIDGCSKFQAFYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIP 235 +LEE+A++DG + FQAF+++ILPL++PG+ AT ++IFLTAWDELLFA VLTT + T+P Sbjct: 61 ELEEAAMVDGATPFQAFHRVILPLALPGLAATAVYIFLTAWDELLFAQVLTTEATA-TVP 119 Query: 236 VGIRLFVGQYNTRYDLLMAASTVVTVPVMVIFFMTQKYFISGMTAGAVKG 285 VGIR FVG Y RYDL+MAA+TV T+PV+V+FF Q+ I G+TAGAVKG Sbjct: 120 VGIRNFVGNYQNRYDLVMAAATVATLPVLVLFFFVQRQLIQGLTAGAVKG 169 >ref|NP_630682.1| putative transmembrane sugar transport protein [Streptomyces coelicolor A3(2)] pir||T35791 probable transmembrane sugar transport protein - Streptomyces coelicolor emb|CAA19796.1| putative transmembrane sugar transport protein [Streptomyces coelicolor A3(2)] Length = 279 Score = 200 bits (509), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 184/273 (67%), Gaps = 10/273 (3%) Query: 14 LTSLTWFIVVVTIFPILWMIFTSLHSNDQILNGITTFS-LPKPQWVN-YVNMWDTVNFAI 71 LT LT F+ + P+ M+ +SL + + + F LP + Y+++W TV A Sbjct: 15 LTLLTGFV----LLPVYVMVSSSLKPLEDV---SSQFHWLPSNLTIRPYIDIWSTVPLAK 67 Query: 72 YFRNSLLICGATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLM 131 YF NSL++ GA T+ + AV A YA++R++F G ++FS++++STQ+ PGI+FL P++L+ Sbjct: 68 YFVNSLIVAGAATVCSVVIAVFAAYAVSRYEFRGKRVFSVTVLSTQMFPGILFLLPLFLI 127 Query: 132 FLWIKNTFGLPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQA 191 ++ I N G+ + + G+IL Y F P SIW++ G+F S+PRDL+E+A++DGC +A Sbjct: 128 YVNIGNATGIALFGSRGGLILTYLTFSLPFSIWMLIGYFDSVPRDLDEAALVDGCGPLRA 187 Query: 192 FYKIILPLSVPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDL 251 +K+++P ++PGI+A ++ F+TAW E+LFA V+T + +T+ VG++ + Q + ++ Sbjct: 188 LFKVVVPAAIPGIVAVAVYAFMTAWGEVLFASVMTNDA-TRTLAVGLQGYSTQNDVYWNQ 246 Query: 252 LMAASTVVTVPVMVIFFMTQKYFISGMTAGAVK 284 +MAAS VV+VPV+ F + Q+Y ++G+TAGAVK Sbjct: 247 IMAASLVVSVPVVAGFLLLQRYLVAGLTAGAVK 279 >ref|NP_968137.1| ABC-type Maltose/ Maltodextrin permease [Bdellovibrio bacteriovorus HD100] emb|CAE79130.1| ABC-type Maltose/ Maltodextrin permease [Bdellovibrio bacteriovorus] Length = 272 Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 99/265 (37%), Positives = 167/265 (63%), Gaps = 14/265 (5%) Query: 25 TIFPILWMIFTSLHSNDQILNGITTFSL----PKPQWVNYVNMWDTVNFAIYFRNSLLIC 80 +I+PIL+++ SL + N T SL P + N+V+++ T +F I+ RNSL++ Sbjct: 18 SIYPILYVLSVSLRPD----NAFQTQSLEIIGPNASFKNFVDLFATTDFLIWMRNSLVVS 73 Query: 81 GATTLLAGAFAVLAGYALARFDFPGSKLFSMSIISTQLIPGIMFLFPIYLMFLWIKNTFG 140 ATTLL A A + YALAR+ F G + S++ TQ+ P M + P Y++ ++ Sbjct: 74 AATTLLGVALASTSAYALARYRFRGRNMMLFSLLMTQMFPATMLMLPFYIILSKLR---- 129 Query: 141 LPMINTYWGMILVYTAFYTPISIWIMRGFFVSIPRDLEESAVIDGCSKFQAFYKIILPLS 200 +I+++WG+ L+Y++ P IW M+ ++ +IPR+LEE+A++DGCSK+ FYKIILP+S Sbjct: 130 --LIDSFWGLFLIYSSTALPFCIWQMKAYYDTIPRELEEAALLDGCSKWMIFYKIILPVS 187 Query: 201 VPGIIATGIFIFLTAWDELLFAWVLTTSSDVQTIPVGIRLFVGQYNTRYDLLMAASTVVT 260 P ++ T +F F+++W E + A V+ + T+P+G+R F T++ L A + +V+ Sbjct: 188 SPALVITALFSFMSSWSEYVIAAVVLQDPQLYTLPLGLRSFQASLATQWGLYAAGALIVS 247 Query: 261 VPVMVIFFMTQKYFISGMTAGAVKG 285 VPV+++F +Y +SG+T G+VKG Sbjct: 248 VPVLILFISISRYLVSGLTMGSVKG 272 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.143 0.455 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 406,241,451 Number of extensions: 16148807 Number of successful extensions: 65761 Number of sequences better than 1.0e-05: 1932 Number of HSP's gapped: 63707 Number of HSP's successfully gapped: 1938 Length of query: 285 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 161 Effective length of database: 420,565,302 Effective search space: 67711013622 Effective search space used: 67711013622 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)