BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0009.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_630681.1| putative transmembrane sugar transport protein ... 161 2e-38 ref|NP_822979.1| putative transmembrane sugar transport protein ... 158 2e-37 ref|ZP_00185918.1| hypothetical protein Rxyl331701 [Rubrobacter ... 155 1e-36 ref|NP_694395.1| ABC transporter permease [Oceanobacillus iheyen... 149 7e-35 ref|NP_699500.1| sugar ABC transporter, permease protein [Brucel... 144 3e-33 >ref|NP_630681.1| putative transmembrane sugar transport protein [Streptomyces coelicolor A3(2)] pir||T35790 probable transmembrane sugar transport protein - Streptomyces coelicolor emb|CAA19795.1| putative transmembrane sugar transport protein [Streptomyces coelicolor A3(2)] Length = 342 Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/247 (36%), Positives = 142/247 (57%), Gaps = 5/247 (2%) Query: 49 PMLQGIWMSFLKLNQFTLVKYLKAPFVGLDNYVGLLFNSDNPVRQGLNFAIRNTAIYAVI 108 PM+ GI MSF +L QF + + AP+ GLDN+ + + D PV + L + T + ++ Sbjct: 57 PMVIGIVMSFKELTQFYIRDWTTAPWAGLDNFT-MSVDFDAPVGEALLHSFLVTCAFTIL 115 Query: 109 VTIGVMIMGLMMAMLLNRDFPGRGIARTAMLLPWVVPSYVVGVLWGFMWQQ-NGIINYIL 167 ++G A+ + F GRG+ R L+P+ +P Y + W FM+Q NG++N++L Sbjct: 116 SVGLCWLIGTAAAICMQDAFRGRGLLRAIFLVPYALPVYAAVITWAFMFQHDNGLVNHVL 175 Query: 168 VDVLHLFAEKPFWLLGTNTIWAIIIPTIWRGWPFLMVIFLAGLQTIPDDIYEAATIDGAG 227 D L L + FWL+G N+ A+++ ++W+GWPF +I +AGLQ IP ++YEAA +DGAG Sbjct: 176 HDQLGLTDKPSFWLIGDNSFVALLVVSVWKGWPFAFLIVMAGLQNIPKELYEAAALDGAG 235 Query: 228 KFRQFWNMTLPMLKPVIAVQLLFQIINNVYSYNIVSTMFGNGAGYPGEWGDLLMTALTRQ 287 ++Q +TLP L+PV V +L + +N +FG A E DL+ + + Sbjct: 236 VWQQIRRITLPSLRPVNQVLVLVLFLWTFNDFNTPFVLFGKAA---PEAADLISIHIYQS 292 Query: 288 SFGYWSF 294 SF W+F Sbjct: 293 SFVTWNF 299 >ref|NP_822979.1| putative transmembrane sugar transport protein [Streptomyces avermitilis MA-4680] dbj|BAC69514.1| putative transmembrane sugar transport protein [Streptomyces avermitilis MA-4680] Length = 332 Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 104/291 (35%), Positives = 166/291 (57%), Gaps = 6/291 (2%) Query: 6 ENNLPAKAPSRKRGLWRK-RVRDNKFAYMLMVPTIIFMMLVHLLPMLQGIWMSFLKLNQF 64 E + +P RG R R++ Y+L++P ++ +LVHL+PM+ GI MSF +L QF Sbjct: 12 ERTVRKNSPGAARGPRRTGRIKRIGLPYLLLLPALLLELLVHLVPMVIGIVMSFKELTQF 71 Query: 65 TLVKYLKAPFVGLDNYVGLLFNSDNPVRQGLNFAIRNTAIYAVIVTIGVMIMGLMMAMLL 124 + + AP+ GLDNY + + D PV + L + T + ++ ++G A+ + Sbjct: 72 YIRDWGTAPWSGLDNY-QVSVDFDAPVGEALLHSFLVTIAFTLLSVGLCWLIGTAAAIYM 130 Query: 125 NRDFPGRGIARTAMLLPWVVPSYVVGVLWGFMWQQ-NGIINYILVDVLHLFAEKPFWLLG 183 F GRG+ R L+P+ +P Y + W FM+Q NG++N++L D LHL + FWL+G Sbjct: 131 QDTFRGRGLLRALFLVPYALPVYAAVITWVFMFQHDNGLVNHVLHDQLHLTDKPSFWLIG 190 Query: 184 TNTIWAIIIPTIWRGWPFLMVIFLAGLQTIPDDIYEAATIDGAGKFRQFWNMTLPMLKPV 243 N+ A++ ++W+GWPF +I +AGLQ IP ++YEAA +DGAG ++Q +TLP L+PV Sbjct: 191 DNSFVALLTVSVWKGWPFAFLIVMAGLQNIPGELYEAAALDGAGLWQQIRRITLPSLRPV 250 Query: 244 IAVQLLFQIINNVYSYNIVSTMFGNGAGYPGEWGDLLMTALTRQSFGYWSF 294 V +L + +N +FG A E DL+ + + SF W+F Sbjct: 251 NQVLVLVLFLWTFNDFNTPYVLFGRTA---PEAADLISVHIYQASFVTWNF 298 >ref|ZP_00185918.1| hypothetical protein Rxyl331701 [Rubrobacter xylanophilus DSM 9941] Length = 306 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 155/251 (61%), Gaps = 18/251 (7%) Query: 15 SRKRGLWRKRVR--DNKFAYMLMVPTIIFMMLVHLLPMLQGIWMSFLKLNQFTLVKYLKA 72 R+ G+ R+ + + AY +++PT++ +++V P++ IW+S L+Q T+ Sbjct: 10 KRRGGILREEFSNPERRLAYYMVLPTLLIILVVAFFPVVSSIWLS---LHQATVTN--TG 64 Query: 73 PFVGLDNYVGLLFNSDNPVRQGLNFAIRNTAIYAVIVTIGV-MIMGLMMAMLLNRDFPGR 131 FVGL+NY+ + N D +GL NT I+ V V++G+ I+GL +A+ +NR F GR Sbjct: 65 AFVGLENYIEMFQNDD--FIEGLT----NTVIFTV-VSVGLEFIIGLGIALAINRAFRGR 117 Query: 132 GIARTAMLLPWVVPSYVVGVLWGFMWQ-QNGIINYILVDVLHLFAEKPFWLLGTNTIWAI 190 G+ R A+L+PW P+ + V+W M+Q Q GIINY+ + L + ++ P T + A Sbjct: 118 GLVRAAVLVPWAFPTVISAVMWRLMFQDQVGIINYV-ANALGIISQ-PILSDRTLLLIAA 175 Query: 191 IIPTIWRGWPFLMVIFLAGLQTIPDDIYEAATIDGAGKFRQFWNMTLPMLKPVIAVQLLF 250 I+ +W+ PF+ ++ LAGLQ IP D+YEAA +DGA ++F+++TLP+LKP I V +LF Sbjct: 176 ILVDVWKTTPFMALLLLAGLQVIPGDVYEAAKVDGANVLQRFFSITLPLLKPAILVAVLF 235 Query: 251 QIINNVYSYNI 261 + ++ Y++ Sbjct: 236 RTLDAYRVYDL 246 >ref|NP_694395.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15429.1| ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 441 Score = 149 bits (377), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 141/229 (61%), Gaps = 13/229 (5%) Query: 70 LKAPFVGLDNYVGLLFNSDNPVRQGLNFAIRNTAIYAVIVTIGVMIMGLMMAMLLNRDFP 129 L++ F+GL NY L DN + A+ NT + VI +++G+ +A+L+NR F Sbjct: 190 LQSNFIGLKNYGKYL--QDNRMWG----ALWNTTFFTVITVALELVIGVCIALLINRAFK 243 Query: 130 GRGIARTAMLLPWVVPSYVVGVLWGFMWQ-QNGIINYILVDVLHLFAEKPFWLLGTNT-- 186 GRGI R ++L+PW +P+ V ++WGF++ Q+GI+ + L + LH+ + WLL T+ Sbjct: 244 GRGIIRASVLIPWAIPTAVAAMMWGFLFDGQSGIVAHYL-EALHIIPDAS-WLLSTSDGG 301 Query: 187 IWAIIIPTIWRGWPFLMVIFLAGLQTIPDDIYEAATIDGAGKFRQFWNMTLPMLKPVIAV 246 +++II+ +W+ P++ ++ LAGLQTIP+ +YEA+ +DGA KF+QFW +TLP+LK I V Sbjct: 302 MFSIILADVWKTTPYMALLILAGLQTIPESLYEASDVDGANKFQQFWKITLPLLKSSILV 361 Query: 247 QLLFQIINNVYSYNIVSTMFGNGAGYPGEWGDLLM--TALTRQSFGYWS 293 LLF+ ++ ++++ + G G E + T +Q+FG S Sbjct: 362 ALLFRTLDAFRVFDLIYVLTGGGPANATESISVYAYKTLFAQQNFGEGS 410 >ref|NP_699500.1| sugar ABC transporter, permease protein [Brucella suis 1330] gb|AAN33505.1| sugar ABC transporter, permease protein [Brucella suis 1330] Length = 325 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 93/278 (33%), Positives = 157/278 (56%), Gaps = 19/278 (6%) Query: 5 TENNLPAKAPSRKRG---LWRKRVRDNKFAYMLMVPTIIFMMLVHLLPMLQGIWMSFLKL 61 TE +L A R R L +R+R A++ + PT+I + +V P+L+ ++ S L Sbjct: 2 TETSLDASRSLRVRAHSDLGAQRIRS---AWIFLAPTLIVLAIVAGWPLLRTVYFS---L 55 Query: 62 NQFTLVKYLKAPFVGLDNYVG-LLFNSDNPVRQGLNF------AIRNTAIYAVIVTIGVM 114 +L A FVG NY + S V GL A+ NT + ++ Sbjct: 56 TNASLTNLAGAEFVGFKNYFSWVTLKSGRTVYSGLLTDMAWWRAVWNTIRFTLLSVSLET 115 Query: 115 IMGLMMAMLLNRDFPGRGIARTAMLLPWVVPSYVVGVLWGFMW-QQNGIINYILVDVLHL 173 I GL++A++LN +F GRG+ R A+L+PW +P+ V +WG+M Q GI+N+IL++ L + Sbjct: 116 IFGLVVALVLNANFRGRGLVRAAILIPWAIPTIVSAKMWGWMLNDQFGILNHILLN-LGI 174 Query: 174 FAEKPFWLLGTNT-IWAIIIPTIWRGWPFLMVIFLAGLQTIPDDIYEAATIDGAGKFRQF 232 + K W +T + AI+I +W+ PF+ ++ LAGLQ +P DIYEAA IDG + F Sbjct: 175 ISHKIAWTANPDTAMIAILIVDVWKTTPFMALLILAGLQMVPSDIYEAARIDGVHPLKVF 234 Query: 233 WNMTLPMLKPVIAVQLLFQIINNVYSYNIVSTMFGNGA 270 W +TLP+++P + V ++F++++ + ++++ + N A Sbjct: 235 WRVTLPLIRPALMVAIIFRMLDALRIFDLIYVLTPNNA 272 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.143 0.472 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 476,443,661 Number of extensions: 19818284 Number of successful extensions: 64370 Number of sequences better than 1.0e-05: 1579 Number of HSP's gapped: 63521 Number of HSP's successfully gapped: 1584 Length of query: 326 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 200 Effective length of database: 415,135,104 Effective search space: 83027020800 Effective search space used: 83027020800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)