BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0008.p (481 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00061777.1| COG1653: ABC-type sugar transport system, per... 359 8e-98 ref|NP_642627.1| ABC transporter sugar binding protein [Xanthomo... 144 4e-33 ref|NP_637562.1| ABC transporter sugar binding protein [Xanthomo... 144 5e-33 ref|NP_299727.1| ABC transporter sugar-binding protein [Xylella ... 143 8e-33 ref|ZP_00038782.1| COG1653: ABC-type sugar transport system, per... 142 2e-32 >ref|ZP_00061777.1| COG1653: ABC-type sugar transport system, periplasmic component [Clostridium thermocellum ATCC 27405] Length = 459 Score = 359 bits (922), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 185/416 (44%), Positives = 254/416 (61%), Gaps = 10/416 (2%) Query: 69 EPVTLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGP 128 +PV L W+MPNS PD D +K + P+ +P++TV+ TV+DW +A TKIT AATSGE P Sbjct: 48 DPVKLTMWIMPNSDTPDQDLLKVVKPFTDANPHITVEPTVVDWSAALTKITAAATSGEAP 107 Query: 129 DLLQLGSTWVPAIASM-GGIDKVTDKVADVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVD 187 D+ Q+GSTW AI +M G + ++T K+ AF+ + ++ I G +++G+PWF + Sbjct: 108 DITQVGSTWTAAIGAMEGALVELTGKI----DTSAFVESTLQSAYIKGTDKMFGMPWFTE 163 Query: 188 ARAIYYRTDVFKQAGVNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVH 247 RA++YR D ++AGVNPET F WD FK AL+ +NG VDGKK+ ALG+PGKNDWNVVH Sbjct: 164 TRALFYRKDACEKAGVNPETDFATWDKFKDALKKLNGIEVDGKKLVALGMPGKNDWNVVH 223 Query: 248 NIFPWIWAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDF 307 N WI+ AGGD ++E+ F+ E LKG+ FY+ LA EGL+D+ SLEKN+S IES F Sbjct: 224 NFSWWIYGAGGDFVNEEGTQATFSSENALKGIKFYSELAVEGLMDEPSLEKNTSDIESAF 283 Query: 308 GDGKSAVIISGPWLAKNFATPKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSELTVF 367 GDG A GPW+ ++ K G D V +P GP G+ F+GGS L +F Sbjct: 284 GDGAYATAFMGPWVISSYTKNKEENGND---LIDKIGVTMVPEGPAGRYAFMGGSNLVIF 340 Query: 368 SGSKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL-DANMKAFSEAT-KYG 425 + SKNK+ EL+K+ S EAQ Y+ VS LP + + P D+ MK F E KYG Sbjct: 341 NSSKNKDEAVELLKFFASKEAQVEYSKVSKMLPVVKAAYEDPYFEDSLMKVFKEQVDKYG 400 Query: 426 KTYPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKAIINQ 481 K Y S+P W E + + IWD V V G YS + Q + S++ I+ + Sbjct: 401 KHYASVPGWASAEVIFSEGLSKIWDNVMEVDGAYSYDKTVQIVKDVESQINQILQE 456 >ref|NP_642627.1| ABC transporter sugar binding protein [Xanthomonas axonopodis pv. citri str. 306] gb|AAM37163.1| ABC transporter sugar binding protein [Xanthomonas axonopodis pv. citri str. 306] Length = 456 Score = 144 bits (364), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 108/410 (26%), Positives = 183/410 (44%), Gaps = 30/410 (7%) Query: 72 TLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLL 131 T+ W M + A+ + + K++P + V V + +A K+ TA + PD+ Sbjct: 29 TVRFWAMGKEAEVVAELVADFE---KQNPTIHVDVQNIPMTAAHEKLLTAFAADGLPDVC 85 Query: 132 QLGSTWVPAIASMGGIDKVTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDAR 189 QLG+TW+P A + ++ + VA + + P +W T + D +YGVPW+VD R Sbjct: 86 QLGNTWLPEFALLDTLEPMQPYVARSKIVDPADYFPGVWDTNLV--DGTLYGVPWYVDTR 143 Query: 190 AIYYRTDVFKQAGVNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHNI 249 ++YR D+ ++AG + K W + + A+ + G A+ +P N Sbjct: 144 LLFYRKDLLREAGYSQMP--KTWAEMEQVMAAIKRKV--GPDRYAILMP----LNEFEQQ 195 Query: 250 FPWIWAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGD 309 + +L + + F K + FY + +G K S E S + +F + Sbjct: 196 LSFALQQDDRLLRDHDNYGNFRGAGFRKALGFYDNMYQQGWAPKVS-ETQVSNVWYEFFN 254 Query: 310 GKSAVIISGPWLAKNFATPKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSELTVFSG 369 G A +SGPW + F + G N+ APLP G + GGS L +F Sbjct: 255 GYYAFYLSGPWNVREFKLRQPPG------MEGNWGTAPLPGPNGLGAGIAGGSSLVIFKS 308 Query: 370 SKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL--DANMKAFSEATKYGKT 427 S++K+A+W+LI+YL+ + Q + + G LP + S P L DA AF + + K Sbjct: 309 SQHKDASWKLIEYLSQPQVQARFHAIIGDLPPRRSTWKLPSLANDALAHAFGDQLERVKA 368 Query: 428 YPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKA 477 P + +W ++ + V+G S ++ QELD E+ A Sbjct: 369 TPKVLEWERIVQEMRLVTERV------VRGGQSHDAAVQELDQRVDEILA 412 >ref|NP_637562.1| ABC transporter sugar binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gb|AAM41486.1| ABC transporter sugar binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 448 Score = 144 bits (363), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 110/410 (26%), Positives = 182/410 (44%), Gaps = 30/410 (7%) Query: 72 TLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLL 131 T+ W M + A+ +D + +++P + V V + +A K+ TA + PD+ Sbjct: 29 TVRFWAMGKEAEVVAEL---VDEFERQNPGIKVDVQNIPMTAAHEKLLTAFAADGLPDVC 85 Query: 132 QLGSTWVPAIASMGGIDKVTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDAR 189 QLG+TW+P A + ++ + VA + + + P +W T + D +YGVPW+VD R Sbjct: 86 QLGNTWLPEFALLDTLEPMQPYVARSSIVDPKDYFPGVWDTNLV--DGTLYGVPWYVDTR 143 Query: 190 AIYYRTDVFKQAGVNPETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHNI 249 ++YR D+ ++AG K W + + A+ G A+ +P N Sbjct: 144 LLFYRKDLLREAGYTEMP--KTWAEMEQVMAAIKRHV--GPDRYAILMP----LNEFEQQ 195 Query: 250 FPWIWAAGGDVLSEDNKNVIFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDFGD 309 + +L + + F E K + FY + +G K S E S + +F + Sbjct: 196 LSFALQQDDRLLRDHDNYGNFRGEGFRKALGFYDTMYQKGWAPKVS-ETQVSNVWYEFFN 254 Query: 310 GKSAVIISGPWLAKNFATPKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSELTVFSG 369 G A +SGPW + F + GM+ K + APLP G + GGS L +F Sbjct: 255 GYYAFYLSGPWNVREFKL-RQPPGMEGK-----WGTAPLPGPNGLGAGIAGGSSLVIFKS 308 Query: 370 SKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL--DANMKAFSEATKYGKT 427 S++K+A W+LI+YL+ Q + + G LP + S P L D AF + + K Sbjct: 309 SQHKDAAWKLIEYLSQPTVQARFHAIIGDLPPRRSTWKLPSLANDELAHAFGDQLERVKA 368 Query: 428 YPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKA 477 P + +W ++ + V+G S E QELD E+ A Sbjct: 369 TPKVLEWERIVQEMRLVTERV------VRGGQSHEDAVQELDKRVDEILA 412 >ref|NP_299727.1| ABC transporter sugar-binding protein [Xylella fastidiosa 9a5c] pir||E82557 ABC transporter sugar-binding protein XF2448 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF85247.1| ABC transporter sugar-binding protein [Xylella fastidiosa 9a5c] Length = 430 Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 188/415 (45%), Gaps = 40/415 (9%) Query: 72 TLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLL 131 T+ W M + A ++ + KE+P + V++ + +A K+ TA + PD+ Sbjct: 27 TVRFWAMGREAEVVAALVRDFE---KEYPGIHVELQNIPMSAAHEKLLTAFAADRLPDVC 83 Query: 132 QLGSTWVPAIASMGGIDKVTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDAR 189 QLG+TW+P A + ++ + V+ +V + + P +W+T +AG +YGVPW+VD R Sbjct: 84 QLGNTWLPEFALLDALEPLQPYVSTSNVVMSADYFPGVWETNVVAG--RLYGVPWYVDTR 141 Query: 190 AIYYRTDVFKQAGVN-PETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHN 248 ++YR D+ + AG P T + DW+ +A++ + V + A L + + + Sbjct: 142 LLFYRKDILEVAGYRAPLTTWADWERAMAAIK----RYVGADRYAILMPLNEFEQQLSLA 197 Query: 249 IFPWIWAAGGDVLSEDNKNV-IFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDF 307 + D L DN N F + + FY + + K S E S + +F Sbjct: 198 L------QQDDPLLRDNDNYGNFRSPGFRRALHFYRTIYGQEWAPKVS-ETQVSNVWYEF 250 Query: 308 GDGKSAVIISGPWLAKNFAT---PKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSEL 364 +G A SGPW + F P +G + PLP G + GGS L Sbjct: 251 FNGNYAFYFSGPWNVREFKLRQPPNMSG---------QWGTMPLPGPNGLGAGIAGGSSL 301 Query: 365 TVFSGSKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL--DANMKAFSEAT 422 +F S++K+ W L++YL+ + Q + ++ G LP + S P L D +AF+E Sbjct: 302 VIFKSSQSKQVAWRLVEYLSRPQVQARFHSIIGDLPPRRSTWHFPGLAEDPLARAFAEQL 361 Query: 423 KYGKTYPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKA 477 + K P + +W ++ + V+G SE+ ++LD ++ A Sbjct: 362 ERVKATPKVLEWERIVQEMRLITEQV------VRGGLSEQQAVEQLDQRVDKILA 410 >ref|ZP_00038782.1| COG1653: ABC-type sugar transport system, periplasmic component [Xylella fastidiosa Dixon] Length = 430 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 107/415 (25%), Positives = 187/415 (45%), Gaps = 40/415 (9%) Query: 72 TLNAWVMPNSPKPDADFMKTLDPYLKEHPNVTVKVTVLDWGSAWTKITTAATSGEGPDLL 131 T+ W M + A ++ + KE+P + V++ + +A K+ TA + PD+ Sbjct: 27 TVRFWAMGREAEVVAALVRDFE---KEYPGIHVELQNIPMSAAHEKLLTAFAADRLPDVC 83 Query: 132 QLGSTWVPAIASMGGIDKVTDKVA--DVGGAEAFLPAIWKTTSIAGDSEVYGVPWFVDAR 189 QLG+TW+P A + ++ + V+ V + + P +W+T +AG +YGVPW+VD R Sbjct: 84 QLGNTWLPEFALLDALEPLQPYVSTSKVVMSADYFPGVWETNVVAG--RLYGVPWYVDTR 141 Query: 190 AIYYRTDVFKQAGVN-PETAFKDWDSFKSALEAVNGQTVDGKKIAALGLPGKNDWNVVHN 248 ++YR D+ + AG P T + DW+ +A++ + V + A L + + + Sbjct: 142 LLFYRKDILEAAGYRAPLTTWADWERAMAAIK----RYVGADRYAILMPLNEFEQQLSLA 197 Query: 249 IFPWIWAAGGDVLSEDNKNV-IFNEEKGLKGVMFYTGLAHEGLVDKSSLEKNSSQIESDF 307 + D L DN N F + + FY + + K S E S + +F Sbjct: 198 L------QQDDPLLRDNDNYGNFRSPGFRRALHFYRTIYEQEWAPKVS-ETQVSNVWYEF 250 Query: 308 GDGKSAVIISGPWLAKNFAT---PKANGGMDDKKAAKNFAVAPLPAGPGGQSTFVGGSEL 364 +G A SGPW + F P +G + LP G + GGS L Sbjct: 251 FNGNYAFYFSGPWNVREFKLRQPPNMSG---------QWGTMALPGPNGLGAGIAGGSSL 301 Query: 365 TVFSGSKNKEATWELIKYLTSDEAQKTYANVSGQLPTKLSILDAPDL--DANMKAFSEAT 422 +F S++K+A W L++YL+ + Q + ++ G LP + S P L D +AF+E Sbjct: 302 VIFKSSQSKQAAWRLVEYLSRPQVQARFHSIIGDLPPRRSTWHFPGLAEDPLARAFAEQL 361 Query: 423 KYGKTYPSIPQWGPTETALQKHFANIWDIVAGVKGKYSEESVKQELDSAASEVKA 477 + K P + +W ++ + V+G SE+ ++LD ++ A Sbjct: 362 ERVKATPKVLEWERIVQEMRLITEQV------VRGGLSEQQAVEQLDQRVDKILA 410 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.313 0.131 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 718,508,489 Number of extensions: 30846006 Number of successful extensions: 58654 Number of sequences better than 1.0e-05: 327 Number of HSP's gapped: 58404 Number of HSP's successfully gapped: 328 Length of query: 481 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 352 Effective length of database: 406,989,807 Effective search space: 143260412064 Effective search space used: 143260412064 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 128 (53.9 bits)