BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0290.0006.p
         (72 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242131.1| BH1265~unknown [Bacillus halodurans] >gi|254897...    94   1e-18
ref|NP_692932.1| hypothetical protein OB2011 [Oceanobacillus ihe...    88   6e-17
ref|NP_658422.1| hypothetical protein predicted by GeneMark [Bac...    82   4e-15

>ref|NP_242131.1| BH1265~unknown [Bacillus halodurans]
 pir||A83808 hypothetical protein BH1265 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB04984.1| BH1265~unknown [Bacillus halodurans]
          Length = 62

 Score = 93.6 bits (231), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/58 (67%), Positives = 50/58 (86%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEEI 61
          M+CPNC SKDIGKIG+HQ+YCW CF+E+T+   K+S++QVEEDGTLSSLDDLF   ++
Sbjct: 1  MQCPNCQSKDIGKIGTHQYYCWNCFVEMTLTKGKLSLHQVEEDGTLSSLDDLFEDHDL 58


>ref|NP_692932.1| hypothetical protein OB2011 [Oceanobacillus iheyensis HTE831]
 dbj|BAC13967.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 61

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 49/57 (85%)

Query: 4  MKCPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEE 60
          ++CPNC  K IGKIGSH +YCW C IELTV+G++++V+Q+E DG+LSSLDDLF+ EE
Sbjct: 2  LRCPNCRGKQIGKIGSHDYYCWSCCIELTVSGDQINVHQIESDGSLSSLDDLFTLEE 58


>ref|NP_658422.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_834100.1| hypothetical protein [Bacillus cereus ATCC 14579]
 ref|NP_846840.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 ref|NP_980769.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAP11301.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP28326.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAS43377.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 62

 Score = 82.0 bits (201), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 44/55 (80%)

Query: 6  CPNCNSKDIGKIGSHQFYCWGCFIELTVNGEKMSVYQVEEDGTLSSLDDLFSGEE 60
          CPNC  KDIGKIG +QFYCW C+IEL+V+  K+  +QVEEDG+LSSLDDLF   E
Sbjct: 4  CPNCKGKDIGKIGVNQFYCWNCYIELSVSKGKIHTHQVEEDGSLSSLDDLFDENE 58


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.135    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 109,642,665
Number of extensions: 3511302
Number of successful extensions: 7558
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 7558
Number of HSP's successfully gapped: 3
Length of query: 72
Length of database: 757,237,578
Length adjustment: 43
Effective length of query: 29
Effective length of database: 640,488,321
Effective search space: 18574161309
Effective search space used: 18574161309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)