BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0290.0003.p (159 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_053202.1| pXO2-47 [Bacillus anthracis] >gi|21392944|ref|N... 187 9e-47 ref|NP_242925.1| BH2059~unknown conserved protein [Bacillus halo... 182 2e-45 ref|NP_388053.1| ybbK [Bacillus subtilis] >gi|23822307|sp|Q45584... 175 3e-43 ref|NP_834603.1| hypothetical Cytosolic Protein [Bacillus cereus... 161 5e-39 ref|NP_981362.1| conserved hypothetical protein [Bacillus cereus... 159 1e-38 >ref|NP_053202.1| pXO2-47 [Bacillus anthracis] ref|NP_653023.1| conserved hypothetical protein, (pXO2-47) [Bacillus anthracis str. A2012] gb|AAF13652.1| pXO2-47 [Bacillus anthracis] gb|AAM26212.1| conserved hypothetical protein, (pXO2-47) [Bacillus anthracis str. A2012] Length = 154 Score = 187 bits (474), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 94/147 (63%), Positives = 112/147 (76%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCLAG VRYN T CL++TI +L+D +A+ VCPELLG F TPREPAEI+GGDG Sbjct: 1 MILVSSCLAGKPVRYNGTACLNDTIQKLIDEKKAIPVCPELLGGFVTPREPAEILGGDGY 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+G AKVM+R GNDV+E+YI GA K L A+ AS VVLKE SPSCGS IY+G F Sbjct: 61 DVLEGKAKVMERSGNDVTELYINGAMKTLNLAQEMQASHVVLKEYSPSCGSKEIYSGEFV 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G+K+ G GVT ALL GI+VISE +L Sbjct: 121 GKKVTGVGVTTALLESKGIKVISELEL 147 >ref|NP_242925.1| BH2059~unknown conserved protein [Bacillus halodurans] pir||C83907 hypothetical protein BH2059 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05778.1| BH2059~unknown conserved protein [Bacillus halodurans] Length = 161 Score = 182 bits (463), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 88/147 (59%), Positives = 112/147 (76%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCLAG VRYN + CL+E I L++ +A VCPELL FSTPREPAEIVGG G Sbjct: 1 MILVSSCLAGRHVRYNGSHCLNEQIAALIEAGKATMVCPELLAGFSTPREPAEIVGGTGE 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+GTAKV+++ G DV+++YI GAY+ L+ A+ GAS+VVLKENSPSCGS+ IYNG F Sbjct: 61 DVLNGTAKVIEKSGRDVTDLYIKGAYETLKFAQEVGASVVVLKENSPSCGSTKIYNGKFK 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 + I G+GVT ALL ++ I V+S+E Sbjct: 121 NESIAGQGVTTALLAKHNIRVLSDENW 147 >ref|NP_388053.1| ybbK [Bacillus subtilis] sp|Q45584|YBBK_BACSU Hypothetical protein ybbK pir||F69744 hypothetical protein ybbK - Bacillus subtilis dbj|BAA19506.1| YbbK [Bacillus subtilis] emb|CAB11948.1| ybbK [Bacillus subtilis subsp. subtilis str. 168] Length = 151 Score = 175 bits (443), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 86/147 (58%), Positives = 107/147 (72%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI+VSSCL G++ RYN + E I +L+D +AV CPELLG FSTPREPAEI+GG G Sbjct: 1 MILVSSCLGGIECRYNGSHAASEKIRKLVDEKKAVMACPELLGGFSTPREPAEIIGGTGE 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VL+GTAK++ G DV+E+Y+ GA K L A+ AS V+LKENSPSCGS IYNG F+ Sbjct: 61 DVLNGTAKIVTASGEDVTELYMEGAAKTLAYAKEINASAVILKENSPSCGSGFIYNGTFS 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G+KI G GVTAALL++ G VIS +L Sbjct: 121 GKKITGSGVTAALLKQAGYRVISGNEL 147 >ref|NP_834603.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] gb|AAP11804.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 153 Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 78/147 (53%), Positives = 99/147 (67%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI++S+CL G+ RY+ D L I +LL V +CPE+LG TPR AEI+GG+G Sbjct: 1 MIVISACLGGIACRYDGNDNLVSKIEELLQKEDTVLICPEVLGGLPTPRPSAEIIGGNGD 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VLDG AKVM + G DV+E ++ GAYKALEQ +N ++LKE SPSCGSS IY G F Sbjct: 61 DVLDGKAKVMTKDGEDVTEAFVSGAYKALEQIKNLHPEYIILKERSPSCGSSTIYTGEFN 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G K G GVT AL +R+G +VISEE+ Sbjct: 121 GNKQTGFGVTTALFKRHGFKVISEEEF 147 >ref|NP_981362.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43970.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 153 Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 78/147 (53%), Positives = 98/147 (66%) Query: 1 MIIVSSCLAGMKVRYNSTDCLDETIHQLLDNNRAVAVCPELLGEFSTPREPAEIVGGDGG 60 MI++S+CL G+ RY+ D L I LL V +CPE+LG TPR AEI+GG+G Sbjct: 1 MIVISACLGGIACRYDGNDNLVSKIEDLLQQEDTVLICPEVLGGLPTPRPSAEIIGGNGD 60 Query: 61 AVLDGTAKVMDRLGNDVSEMYILGAYKALEQARNAGASIVVLKENSPSCGSSMIYNGAFA 120 VLDG AKVM + G DV+E ++ GAYKALEQ +N ++LKE SPSCGSS IY G F Sbjct: 61 DVLDGKAKVMTKDGEDVTESFVSGAYKALEQIKNLQPEYIILKERSPSCGSSTIYTGEFN 120 Query: 121 GQKIPGEGVTAALLRRNGIEVISEEQL 147 G K G GVT AL +R+G++VISEE Sbjct: 121 GNKQTGYGVTTALFKRHGLKVISEEDF 147 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 233,944,020 Number of extensions: 9584777 Number of successful extensions: 23846 Number of sequences better than 1.0e-05: 49 Number of HSP's gapped: 23805 Number of HSP's successfully gapped: 49 Length of query: 159 Length of database: 757,237,578 Length adjustment: 115 Effective length of query: 44 Effective length of database: 445,001,193 Effective search space: 19580052492 Effective search space used: 19580052492 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 120 (50.8 bits)