BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0023.p (322 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans]... 206 8e-52 pir||S72642 probable ABC-type transport protein xynB - Thermoana... 196 6e-49 ref|NP_814960.1| ABC transporter, permease protein [Enterococcus... 183 4e-45 ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans... 181 2e-44 ref|ZP_00035515.1| COG0395: ABC-type sugar transport system, per... 172 1e-41 >ref|NP_242778.1| transmembrane lipoprotein [Bacillus halodurans] pir||H83888 transmembrane lipoprotein lplC [imported] - Bacillus halodurans (strain C-125) dbj|BAB05631.1| transmembrane lipoprotein [Bacillus halodurans] Length = 297 Score = 206 bits (523), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 111/294 (37%), Positives = 179/294 (60%), Gaps = 7/294 (2%) Query: 31 DKMISVTIYIVFSLFAFICVYPFYSIIINTISANDL--SAKGEIVFWPKGIHFQNYVDVF 88 D++ Y+ ++ + +YPF +++ IS ND + +G I WP+ +NY +F Sbjct: 7 DRLFDWCNYLFLTMVLLVTLYPFLNVL--AISLNDSVDTVRGGIYIWPREFTLENYRVIF 64 Query: 89 KIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGII 148 + L F+ S+ RTVIGT+L V +SA + F ++ D +KF ++T++F+ G+I Sbjct: 65 EYDHLVTGFINSVLRTVIGTVLGVFSSAMVAFTLSRGDFQARKFVSTIIVLTLYFSGGLI 124 Query: 149 PWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYK 208 P Y+ +R L+L N F Y+LP +V F II+V++F++ P LQ++A IDGA FTIF++ Sbjct: 125 PGYMLIRELNLINTFWVYVLPGMVNAFHIIIVRSFMDGLPYSLQESAKIDGANDFTIFWR 184 Query: 209 VILPISKPILATVAIFSAVNQWNSFQDTLLL-VTDSKLYSLQFILYNYINQASSLSTMVN 267 +ILP+ P+LAT+A+F AV QWN++ DT L ++ L +LQ+ L + + ++ N Sbjct: 185 IILPLCTPVLATIALFVAVGQWNAWFDTYLYNSSNPNLTTLQYELMKILQNTTMSASDAN 244 Query: 268 LQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVK 321 T+ S + SI+M +++I + PILLVYP QRFFVKG+ +GAVK Sbjct: 245 AFRG--TSGEDHSRTVSPESIKMAISMITIIPILLVYPFVQRFFVKGMTLGAVK 296 >pir||S72642 probable ABC-type transport protein xynB - Thermoanaerobacterium thermosulfurigenes gb|AAB08045.1| XynB [Thermoanaerobacterium thermosulfurigenes] Length = 301 Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 179/306 (58%), Gaps = 9/306 (2%) Query: 20 SKKIKMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINTISANDL--SAKGEIVFWPK 77 +K ++++S D + YI+ ++ + +YPF ++ +S ND + +G I +P+ Sbjct: 2 AKNNRIRLSTEDIVFDTINYILLTIVIIVTLYPFVHVL--AVSFNDAIDTVRGGIYLFPR 59 Query: 78 GIHFQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFT 137 NYV + P ++NA +IS R VIG++L V AS + + ++ D + + Sbjct: 60 KFTTFNYVSILSDPEIYNATIISALRAVIGSVLNVIASIIVAYAISRRDFVLRGIVSKIF 119 Query: 138 IITMFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASI 197 +M+F +G+IP+YL +R LHL NNFL YILP IV+ + I++V+++++ P L ++A I Sbjct: 120 TYSMYFTSGLIPYYLLIRDLHLMNNFLVYILPGIVSAWNIMVVRSYIDGLPASLVESAKI 179 Query: 198 DGAGTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVT-DSKLYSLQFILYNYI 256 DGA I + +I P+S P+LAT+ +F AV QWNS+ DT+L + + L +LQ+ L + Sbjct: 180 DGASELRIIFSIIFPLSVPVLATITLFVAVGQWNSWFDTMLFCSMNPNLSTLQYELQKVL 239 Query: 257 NQASSLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGII 316 + Q + + + S T SIR +T++ V PI++VYP Q++FVKG+ Sbjct: 240 QSTQQFTQ----QASFDMGLRNNSNSVTPESIRAAMTVVAVVPIMMVYPFLQKYFVKGLT 295 Query: 317 IGAVKG 322 IG+VKG Sbjct: 296 IGSVKG 301 >ref|NP_814960.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81030.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 293 Score = 183 bits (465), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 102/283 (36%), Positives = 171/283 (60%), Gaps = 9/283 (3%) Query: 40 IVFSLFAFICVYPFYSIIINTISAN-DLSAKGEIVFWPKGIHFQNYVDVFKIPGLWNAFV 98 ++ LF+ + + P ++I+++++S++ L+ KG +V WPKG +NY VF + AF+ Sbjct: 18 LILVLFSLLIIVPIWNILVSSVSSSSGLAGKG-LVLWPKGFTLENYRKVFSDSSIPRAFL 76 Query: 99 ISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPWYLTMRSLH 158 IS+ +TVIG A + + ++ + G+ + +ITM+F G+IP YL ++SL Sbjct: 77 ISVLKTVIGASTHTLFCAIVAYGLSKSRLVGRNIYTTMGVITMYFGGGMIPTYLLIKSLG 136 Query: 159 LTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYKVILPISKPIL 218 L + F YI+P++ + + ++++ F P L+++A IDGA F IFYK+ LP++KP L Sbjct: 137 LLDTFWVYIIPALFSYYDVVILMNFFREIPPSLEESAKIDGASEFQIFYKIFLPLTKPAL 196 Query: 219 ATVAIFSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTAIAS 278 AT+ +F+ V QWN F T L +T LY LQ +Y I Q S+LSTM +GST Sbjct: 197 ATIILFNGVGQWNDFMTTKLYITKEYLYPLQMKIYEIIVQ-SNLSTMT---ESGST---D 249 Query: 279 LSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVK 321 + + TT +++ +I PIL++YP+ Q+ F+ G++ GAVK Sbjct: 250 MVVQATTRGVQLATIVITTIPILIIYPLLQKHFIGGMMAGAVK 292 >ref|NP_242979.1| ABC transporter (permease) [Bacillus halodurans] pir||A83914 ABC transporter (permease) BH2113 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05832.1| ABC transporter (permease) [Bacillus halodurans] Length = 308 Score = 181 bits (459), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/306 (35%), Positives = 183/306 (59%), Gaps = 8/306 (2%) Query: 22 KIKMQVSATDKMISVTIYIVFSLFAFICVYPFYSIIINT--ISANDLS--AKGEIVFWPK 77 K+ + D I ++ I+F L +CV Y ++ NT +S ND + +G I FWP+ Sbjct: 6 KLAGKRRGADDFIFDSLNIIFMLL--LCVVMLYPMV-NTLAVSLNDATDTVRGGIYFWPR 62 Query: 78 GIHFQNYVDVFKIPGLWNAFVISIGRTVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFT 137 + N+ VF L +A +IS+ RTVIGT ++V +A + + +++ KKF Sbjct: 63 EFTWYNFEHVFSQSQLLHAGMISVLRTVIGTAISVFCTAMVAYTISRKQFVLKKFVTIAF 122 Query: 138 IITMFFNAGIIPWYLTMRSLHLTNNFLAYILPSIVAPFFIILVKTFVESTPKELQQAASI 197 ++TM+ N G+IP YL MR L L F YI+P ++ F +I++++F+E P+ + ++A I Sbjct: 123 VLTMYLNGGLIPTYLLMRELSLIGTFWIYIIPGLIGVFNLIVIRSFIEGLPETIFESAKI 182 Query: 198 DGAGTFTIFYKVILPISKPILATVAIFSAVNQWNSFQDTLLLVTDS-KLYSLQFILYNYI 256 DGAG FT F+K+ LP+ P++ATV++F AV QWNS+ D + ++ +L +LQ+ L + Sbjct: 183 DGAGEFTQFFKIALPLCLPVIATVSLFVAVGQWNSWFDVFIYNSNKPELSTLQYELMKIL 242 Query: 257 NQASSLSTMVNLQNAGSTAIASLSTKQTTTSIRMTVTIIVVAPILLVYPIFQRFFVKGII 316 +++ + + +A +++ + + T S+R +TIIV PI+ VYP Q++FVKG+ Sbjct: 243 QNSNASMSSGSAASAFASSQSGVVETVTPQSVRAAMTIIVSVPIICVYPFLQKYFVKGLT 302 Query: 317 IGAVKG 322 +G VKG Sbjct: 303 LGGVKG 308 >ref|ZP_00035515.1| COG0395: ABC-type sugar transport system, permease component [Enterococcus faecium] Length = 290 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/279 (30%), Positives = 163/279 (58%), Gaps = 10/279 (3%) Query: 44 LFAFICVYPFYSIIINTISANDLSAKGEIVFWPKGIHFQNYVDVFKIPGLWNAFVISIGR 103 L A IC+ PF +II + ++ + + +P Y + P ++ A +SIG Sbjct: 22 LLALICIVPFLNIIATSFASTQEVVAKKFILFPTTFSLDAYRYILSTPTIFRALAVSIGV 81 Query: 104 TVIGTILTVGASAFLGFMFAQEDMWGKKFWYRFTIITMFFNAGIIPWYLTMRSLHLTNNF 163 T +GTI+++ A++ + + +++ ++G+ F + +M F+ G+IP +L +RSL L N++ Sbjct: 82 TGVGTIVSMCATSLMAYGLSRKYLFGRGFVNFLVVFSMLFSGGMIPTFLVVRSLGLVNSY 141 Query: 164 LAYILPSIVAPFFIILVKTFVESTPKELQQAASIDGAGTFTIFYKVILPISKPILATVAI 223 A ILP V +I+++ F ++ P L+++A +DG F +F+K++LP++ P +AT+++ Sbjct: 142 WAMILPVAVNAMNMIIMRNFFQALPDSLEESAKMDGCTDFGVFFKIMLPLALPSIATISL 201 Query: 224 FSAVNQWNSFQDTLLLVTDSKLYSLQFILYNYINQASSLSTMVNLQNAGSTAIASLSTKQ 283 F AV WN++ +L + DS + +Q +L + +S + A S+A+ + Q Sbjct: 202 FYAVTYWNTYMTAILYINDSSKWPIQILLRQIVIVSSGM-------QAESSAVDVIPPAQ 254 Query: 284 TTTSIRMTVTIIVVAPILLVYPIFQRFFVKGIIIGAVKG 322 T ++M V +I P+L+VYP Q++FVKG ++G+VKG Sbjct: 255 T---VKMAVIVIATVPMLIVYPFVQKYFVKGALVGSVKG 290 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.139 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 426,205,118 Number of extensions: 16544505 Number of successful extensions: 77731 Number of sequences better than 1.0e-05: 1238 Number of HSP's gapped: 76414 Number of HSP's successfully gapped: 1238 Length of query: 322 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 196 Effective length of database: 415,135,104 Effective search space: 81366480384 Effective search space used: 81366480384 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)