BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0012.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_469563.1| similar to sugar ABC transporters, permease pro... 187 2e-46 ref|NP_694044.1| sugar ABC transporter permease [Oceanobacillus ... 172 8e-42 ref|NP_815894.1| ABC transporter, permease protein [Enterococcus... 168 2e-40 ref|NP_244548.1| sugar ABC transporter (permease) [Bacillus halo... 164 3e-39 ref|NP_356403.1| AGR_L_1220p [Agrobacterium tumefaciens] >gi|179... 158 2e-37 >ref|NP_469563.1| similar to sugar ABC transporters, permease proteins [Listeria innocua] ref|NP_463710.1| similar to sugar ABC transporters, permease proteins [Listeria monocytogenes EGD-e] pir||AC1460 sugar ABC transporters, permease protein homolog lin0218 [imported] - Listeria innocua (strain Clip11262) pir||AD1097 sugar ABC transporters, permease proteins homolog lmo0179 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98394.1| lmo0179 [Listeria monocytogenes] emb|CAC95451.1| lin0218 [Listeria innocua] Length = 292 Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/259 (40%), Positives = 147/259 (56%), Gaps = 5/259 (1%) Query: 57 ISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNL-IMIXXXXXXXXXXXXXXXX 115 ISF+DW+ VS I HF G +NY RL D F +S N + +I Sbjct: 38 ISFTDWDLVSTI---HFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALM 94 Query: 116 INKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADP 175 +N+ + FF+ +YF+P I+S+VA++L+W+ L++P+ G IN FL IG+ P WL DP Sbjct: 95 LNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPN-WLTDP 153 Query: 176 KFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXX 235 + A+I+V+I W +GF MV++L GLQNIS YEAA++DGA+ LRQ F I Sbjct: 154 QTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPT 213 Query: 236 XXXXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMGXXXXX 295 I ++ SF+VFD +M++T GGP+G+T +V +Y AF E GYASAM Sbjct: 214 TFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFI 273 Query: 296 XXXXXXXXQWVGQKKWVNY 314 Q QK+W NY Sbjct: 274 VIFIITIIQNKLQKRWSNY 292 >ref|NP_694044.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] dbj|BAC15078.1| sugar ABC transporter permease [Oceanobacillus iheyensis HTE831] Length = 292 Score = 172 bits (436), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 94/257 (36%), Positives = 134/257 (52%), Gaps = 3/257 (1%) Query: 34 LFISPMXXXXXXXXXXXXXXSGVISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLI 93 L+I P SG DW+ GI F+G+DNY MQD F S + Sbjct: 13 LYILPALLFIAVLIVIPLLLSGYFGLMDWD---GIGAMQFIGLDNYITAMQDSKFWESTL 69 Query: 94 NNLIMIXXXXXXXXXXXXXXXXINKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNN 153 ++ ++ + F K IY +P + S VAIA LW +Y+P+N Sbjct: 70 HSFLLAIFSALSLLLYLVVALILASKIKGANFLKKIYLIPMLLSSVAIAQLWIKVYNPSN 129 Query: 154 GPINGFLRSIGVENPPLWLADPKFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAA 213 G +N L S+GVENPP WLADP L ++ I ++W GF ++IY A L+NI + EAA Sbjct: 130 GMLNSILTSLGVENPPAWLADPNIVLYAIFIPIIWQYAGFYILIYYAALKNIPESIIEAA 189 Query: 214 DVDGATPLRQFFRIXXXXXXXXXXXXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYL 273 +DGA+P++ RI + IVGS K FDLI V+T GGP G++ V+ Y+ Sbjct: 190 KIDGASPIQIAIRIKFPLIMTVFKVTIVLAIVGSLKYFDLIYVMTGGGPNGASEVMASYM 249 Query: 274 YEVAFINLESGYASAMG 290 Y++AF + + GY SA+G Sbjct: 250 YKLAFSSYDFGYGSAIG 266 >ref|NP_815894.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81964.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 300 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/273 (33%), Positives = 152/273 (55%), Gaps = 8/273 (2%) Query: 19 GRMRKQSFYDNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDWNFVSGIEGFHFVGVDN 78 ++R+++ + ++ FI+P S +++F W+ S E FVG+ N Sbjct: 11 NKLRRKNTWTALS---FIAPNFIGFFLFTLIPVICSLILAFMSWDSFSTPE---FVGMKN 64 Query: 79 YTRLMQDESFHRSLINNLI-MIXXXXXXXXXXXXXXXXINKATYFKTFFKVIYFMPFISS 137 +T+++ D++F SL I I +N+ FF+ +F P+++S Sbjct: 65 FTKMIHDDTFWISLKQTFIYTIGVVPLTLICSLGLAILLNRKIRGMKFFRTAFFFPYVTS 124 Query: 138 FVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLADPKFALISVMIIMVWTSLGFNMVI 197 VAIA++W +L+HP GPIN FL+ + +ENPP W + +AL +++I+ VW +G+ M++ Sbjct: 125 LVAIAVVWNMLFHPTMGPINQFLK-LFIENPPGWTSSSTWALPAIIIVSVWRFMGYYMIL 183 Query: 198 YLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXITGIVGSFKVFDLIMVL 257 YLAGLQ++ R+LYEAA +DGA QF + I ++ FKVFDL+ V+ Sbjct: 184 YLAGLQSVPRELYEAASMDGAGKWNQFLNVTLPSLRPTTFFVTIMLVINCFKVFDLVQVM 243 Query: 258 TNGGPAGSTSVIVFYLYEVAFINLESGYASAMG 290 T GGP +T+V+V+ +Y AF+ GYASA+ Sbjct: 244 TGGGPGRATNVLVYEIYNEAFVKFNFGYASAIA 276 >ref|NP_244548.1| sugar ABC transporter (permease) [Bacillus halodurans] pir||A84110 sugar ABC transporter (permease) BH3681 [imported] - Bacillus halodurans (strain C-125) dbj|BAB07400.1| sugar ABC transporter (permease) [Bacillus halodurans] Length = 293 Score = 164 bits (414), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 132/237 (55%), Gaps = 3/237 (1%) Query: 54 SGVISFSDWNFVSGIEGFHFVGVDNYTRLMQDESFHRSLINNLIMIXXXXXXXXXXXXXX 113 +G DW+ GI F+G++NY L+ D+ F S ++L++ Sbjct: 33 TGYYGLMDWD---GIGPMTFIGLENYANLLVDKMFWSSAYHSLLLAIFSVLSLVIYLAIS 89 Query: 114 XXINKATYFKTFFKVIYFMPFISSFVAIALLWRVLYHPNNGPINGFLRSIGVENPPLWLA 173 + F+ I+ +P + S VAIA LW +YHP NG N FL S+G+ENPPLWL+ Sbjct: 90 LVLTGNIKGADLFRKIFLIPMLLSSVAIAQLWMRIYHPTNGVFNRFLTSLGIENPPLWLS 149 Query: 174 DPKFALISVMIIMVWTSLGFNMVIYLAGLQNISRDLYEAADVDGATPLRQFFRIXXXXXX 233 D L ++ I ++W GF ++IY A L+N+ +L EAA +DGATPL+ +++ Sbjct: 150 DTNIVLFAIFIPILWQYAGFYILIYYAALRNVPNELVEAAQIDGATPLQIAYKVKLPLIA 209 Query: 234 XXXXXXXITGIVGSFKVFDLIMVLTNGGPAGSTSVIVFYLYEVAFINLESGYASAMG 290 + ++GS K FDLI V+T+GGP G++ V+ Y+Y++AF + GY SA+G Sbjct: 210 GVIKVTVVLAVIGSLKYFDLIYVMTDGGPNGASEVMASYMYKLAFRTNDFGYGSAIG 266 >ref|NP_356403.1| AGR_L_1220p [Agrobacterium tumefaciens] ref|NP_534729.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] pir||B98208 probable uspA protein [imported] - Agrobacterium tumefaciens (strain C58, Cereon) pir||AG3078 hypothetical protein Atu4251 [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gb|AAK89188.1| AGR_L_1220p [Agrobacterium tumefaciens str. C58 (Cereon)] gb|AAL45045.1| ABC transporter, membrane spanning protein [sugar] [Agrobacterium tumefaciens str. C58 (U. Washington)] Length = 317 Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 98/288 (34%), Positives = 142/288 (49%), Gaps = 5/288 (1%) Query: 28 DNIAGYLFISPMXXXXXXXXXXXXXXSGVISFSDWNFVSGIEGFHFVGVDNYTRLMQDES 87 D GYLFI+P S +WN ++G F F G+ NY +L+ D + Sbjct: 32 DAATGYLFIAPQLIGIVVFVLVPLVLVFWYSLHEWNVLAG--SFRFTGIANYQKLLSDPA 89 Query: 88 FHRSL-INNLIMIXXXXXXXXXXXXXXXXINKATYFKTFFKVIYFMPFISSFVAIALLWR 146 L + + +N+ F T F+ ++F P + S VA ++W Sbjct: 90 IGEVLAVTAVFSAGLALLNMSLALGLALLLNQQLAFMTMFRTLFFSPVVVSLVAWTIVWS 149 Query: 147 VLYHPNNGPINGFLRSIGVENPPLWLADPKFALISVMIIMVWTSLGFNMVIYLAGLQNIS 206 L NNG ING L+ IGVE P WL P A+ISV+++ ++G NM+++LA LQ + Sbjct: 150 FLLQ-NNGGINGLLQMIGVEGPN-WLRHPTTAMISVIVVQALKNVGLNMILFLAALQGVP 207 Query: 207 RDLYEAADVDGATPLRQFFRIXXXXXXXXXXXXXITGIVGSFKVFDLIMVLTNGGPAGST 266 R+L+EAA VDG +QF+RI I IVG+ +VF IM+LT GGP ST Sbjct: 208 RELFEAARVDGVPRFKQFYRITLPMISPTILLASIVTIVGALQVFAQIMILTQGGPGFST 267 Query: 267 SVIVFYLYEVAFINLESGYASAMGXXXXXXXXXXXXXQWVGQKKWVNY 314 +V+V+YLY+ AF GY S + QW ++K+V Y Sbjct: 268 TVLVYYLYQQAFQFYLFGYGSTLSIILLVIVGALTFIQWHLRRKFVFY 315 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.143 0.444 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 392,984,098 Number of extensions: 12708372 Number of successful extensions: 36817 Number of sequences better than 1.0e-05: 1176 Number of HSP's gapped: 35144 Number of HSP's successfully gapped: 1177 Length of query: 314 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 189 Effective length of database: 417,850,203 Effective search space: 78973688367 Effective search space used: 78973688367 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 126 (53.1 bits)