BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0284.0010.p (185 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_815893.1| ABC transporter, permease protein [Enterococcus... 159 2e-38 ref|NP_463711.1| similar to sugar ABC transporter, permease prot... 154 1e-36 ref|NP_469564.1| similar to sugar ABC transporter, permease prot... 154 1e-36 ref|NP_242732.1| sugar transport system (permease) (binding prot... 143 2e-33 ref|NP_347068.1| Sugar permease [Clostridium acetobutylicum] >gi... 139 2e-32 >ref|NP_815893.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81963.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 292 Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/184 (44%), Positives = 114/184 (61%) Query: 2 AAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXXX 61 AAYGFSK+ F+GRD LF+ +AT IP Q+ ++PQFIM R LGL D+ Sbjct: 109 AAYGFSKMNFRGRDTLFITYIATIAIPWQSYMIPQFIMMRQLGLTDTLWSLVLLQAFNAF 168 Query: 62 XTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQN 121 FLL+Q++ I D + ESARID W I+ +I LPL +PALA+ I+ F+ TWNDY Sbjct: 169 GVFLLKQYYSSIPDSLCESARIDGLSEWGIYWKIILPLTKPALASLTIITFVNTWNDYMG 228 Query: 122 PLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAMG 181 P ++L S T+QLG++ F Y+L+MA +V +ILP+ I+F+ QK +EG+A Sbjct: 229 PFIYLSSTENKTIQLGLKMFVGLFDAEYALIMAASVVSILPVGIVFLAMQKYFVEGIATS 288 Query: 182 SVKG 185 +K Sbjct: 289 GMKN 292 >ref|NP_463711.1| similar to sugar ABC transporter, permease protein [Listeria monocytogenes EGD-e] pir||AE1097 sugar ABC transporter, permease protein homolog lmo0180 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98395.1| lmo0180 [Listeria monocytogenes] Length = 282 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 MAAY F++I F GRD LFLL LAT M+P Q ++PQFI+ + G DS+ Sbjct: 98 MAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSV 157 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TFLLRQ F+GI E+ E+A +D A H+TIF ++ LPL +P AT IL F+ +WN Y Sbjct: 158 FGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYL 217 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 PL+ S + TL LG+ G Y LMMAG + +++P+L +++ QK I+G+AM Sbjct: 218 WPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAM 277 Query: 181 GSVK 184 +K Sbjct: 278 SGMK 281 >ref|NP_469564.1| similar to sugar ABC transporter, permease protein [Listeria innocua] pir||AD1460 sugar ABC transporter, permease protein homolog lin0219 [imported] - Listeria innocua (strain Clip11262) emb|CAC95452.1| lin0219 [Listeria innocua] Length = 282 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 112/184 (60%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 MAAY F++I F GRD LFLL LAT M+P Q ++PQFI+ + G DS+ Sbjct: 98 MAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSV 157 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 TFLLRQ F+GI E+ E+A +D A H+TIF ++ LPL +P AT IL F+ +WN Y Sbjct: 158 FGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYL 217 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 PL+ S + TL LG+ G Y LMMAG + +++P+L +++ QK I+G+AM Sbjct: 218 WPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAM 277 Query: 181 GSVK 184 +K Sbjct: 278 SGMK 281 >ref|NP_242732.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] pir||B83883 sugar transport system (permease) (binding protein dependent transporter) BH1866 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05585.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] Length = 285 Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/186 (41%), Positives = 114/186 (61%), Gaps = 1/186 (0%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 +AA+ F+K+ F GRD LF ++AT M+P LVPQFI++R LG D+ Sbjct: 100 LAAFAFAKLNFPGRDKLFFALIATMMLPGIVTLVPQFILFRELGWLDTFKPLMIPGFFGA 159 Query: 61 XXT-FLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDY 119 T F LRQFF+ I +++I++A+ID + IF +I +PL +PA+ T +IL + +ND+ Sbjct: 160 AMTVFFLRQFFMTIPNDLIDAAKIDGLSFFGIFRKIMVPLAKPAIVTQVILGLLAGYNDF 219 Query: 120 QNPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVA 179 PL++L S FTLQL + F + + L+MAG+V A++P L+ F QKQ IEG+ Sbjct: 220 MGPLIYLNSPENFTLQLVLASFRGYYTSEWGLIMAGSVIALIPTLVAFFFAQKQFIEGIV 279 Query: 180 MGSVKG 185 M VKG Sbjct: 280 MTGVKG 285 >ref|NP_347068.1| Sugar permease [Clostridium acetobutylicum] pir||E96952 sugar permease [imported] - Clostridium acetobutylicum gb|AAK78408.1| Sugar permease [Clostridium acetobutylicum] Length = 273 Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 113/185 (61%) Query: 1 MAAYGFSKIIFKGRDVLFLLVLATFMIPTQAILVPQFIMYRWLGLFDSHIXXXXXXXXXX 60 MAA+ FS + FKG+ +LF+ VLAT MIP + L+ ++ LG DS+ Sbjct: 89 MAAFAFSFLDFKGKKILFIAVLATLMIPAETTLISNYLTVGSLGWLDSYKALIVPYMCSA 148 Query: 61 XXTFLLRQFFLGIHDEIIESARIDAAGHWTIFSRIALPLVQPALATYMILRFIWTWNDYQ 120 F++RQ++L I E+ E+A+ID G + F++I +P+ +P +A++ I F+ +WN Y Sbjct: 149 MGIFMMRQYYLTIPKELYEAAKIDGCGSFGFFTKILMPVSRPVIASFGIYSFLVSWNQYL 208 Query: 121 NPLVFLRSDSLFTLQLGIRKFADFSGEFYSLMMAGAVSAILPLLIIFIIGQKQVIEGVAM 180 PL+ +S T+Q+GI + + L+MAG V +LP ++IFIIGQKQ+++G+ Sbjct: 209 WPLLVTSKESSRTVQIGISMLQFSENQSFGLIMAGIVIVLLPSIVIFIIGQKQLVDGMTS 268 Query: 181 GSVKG 185 G+VKG Sbjct: 269 GAVKG 273 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.334 0.147 0.452 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 233,085,495 Number of extensions: 8117779 Number of successful extensions: 33827 Number of sequences better than 1.0e-05: 1236 Number of HSP's gapped: 32376 Number of HSP's successfully gapped: 1236 Length of query: 185 Length of database: 757,237,578 Length adjustment: 118 Effective length of query: 67 Effective length of database: 436,855,896 Effective search space: 29269345032 Effective search space used: 29269345032 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.6 bits) S2: 122 (51.6 bits)