BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0284.0001.p
         (62 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_792729.1| conserved hypothetical protein [Pseudomonas syr...    76   3e-13
ref|ZP_00128205.1| hypothetical protein [Pseudomonas syringae pv...    74   7e-13
ref|ZP_00127732.1| hypothetical protein [Pseudomonas syringae pv...    72   3e-12
gb|EAH90683.1| unknown [environmental sequence]                        65   4e-10
ref|ZP_00088078.1| COG3386: Gluconolactonase [Pseudomonas fluore...    64   1e-09

>ref|NP_792729.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
 gb|AAO56424.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 394

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query: 4   DAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLYKI 54
           DA G V AGDYE+N+IRK LPNG+ +T+AHDPR+LWPDT SIG D  LY I
Sbjct: 308 DADGAVYAGDYEHNAIRKRLPNGVWQTVAHDPRMLWPDTLSIGPDGYLYFI 358


>ref|ZP_00128205.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
          Length = 394

 Score = 74.3 bits (181), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 41/51 (80%)

Query: 4   DAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLYKI 54
           DA+G V AGDYE+NSIRK LP+G  +T+AHDPR+LWPDT SIG D  LY I
Sbjct: 308 DAKGAVYAGDYEHNSIRKRLPDGTWQTVAHDPRMLWPDTLSIGPDGYLYFI 358


>ref|ZP_00127732.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
          Length = 318

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 39/49 (79%)

Query: 4   DAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY 52
           D++G V AGDYE+NSIRK LP+G  +T+ HDPRILWPDT S+G D  LY
Sbjct: 232 DSEGAVYAGDYEDNSIRKRLPDGSWQTVVHDPRILWPDTLSVGTDGYLY 280


>gb|EAH90683.1| unknown [environmental sequence]
          Length = 383

 Score = 65.5 bits (158), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 40/59 (67%), Gaps = 1/59 (1%)

Query: 1   MITDAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY-KIDELP 58
           +  DA G V AGDYE+N+IRK  P G+  T+ HD RILWPDT +IG D  LY   ++LP
Sbjct: 294 LAADANGTVYAGDYEHNAIRKRSPGGVWTTVVHDSRILWPDTLAIGPDGYLYFTANQLP 352


>ref|ZP_00088078.1| COG3386: Gluconolactonase [Pseudomonas fluorescens PfO-1]
          Length = 383

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/49 (61%), Positives = 36/49 (73%)

Query: 4   DAQGNVDAGDYENNSIRKILPNGILETIAHDPRILWPDTFSIGLDQTLY 52
           DA G V AGDYE+N+IRK LP+G  +T+  D R+LWPDT SIG D  LY
Sbjct: 297 DADGAVYAGDYEHNAIRKRLPDGRWQTLVEDSRVLWPDTLSIGPDGYLY 345


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 105,473,568
Number of extensions: 3655611
Number of successful extensions: 6938
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 6938
Number of HSP's successfully gapped: 5
Length of query: 62
Length of database: 757,237,578
Length adjustment: 34
Effective length of query: 28
Effective length of database: 664,924,212
Effective search space: 18617877936
Effective search space used: 18617877936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 120 (50.8 bits)