BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0010.p (429 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_980112.1| competence/damage-inducible protein CinA [Bacil... 372 e-102 ref|NP_833503.1| Competence-damage protein cinA [Bacillus cereus... 370 e-101 ref|NP_657747.1| CinA, Competence-damaged protein [Bacillus anth... 369 e-101 ref|NP_243251.1| competence-damage inducible protein [Bacillus h... 366 e-100 gb|AAB47708.1| CinA [Bacillus subtilis] 343 3e-93 >ref|NP_980112.1| competence/damage-inducible protein CinA [Bacillus cereus ATCC 10987] gb|AAS42720.1| competence/damage-inducible protein CinA [Bacillus cereus ATCC 10987] Length = 412 Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/404 (48%), Positives = 270/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQQAIE+A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +A+SLG L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DMLIFTGGLGPTKDDLTKETIASSLGEELVYDENALALISDYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 ++GA N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LNGANVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + E Y L ++ + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L+VP +L GAVS+E A LA+ V+ + +D G+S TGVA Sbjct: 299 KGGVICYHNDVKQHVLHVPEEVL---STDGAVSKECARYLAENVKELLKADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VFVGLA + PT V+ LNL G+R+ IR R+ K Sbjct: 356 GPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAK 399 >ref|NP_833503.1| Competence-damage protein cinA [Bacillus cereus ATCC 14579] sp|Q81A15|CINA_BACCR CinA-like protein gb|AAP10704.1| Competence-damage protein cinA [Bacillus cereus ATCC 14579] Length = 412 Score = 370 bits (950), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/404 (48%), Positives = 269/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQ+AIE A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +AASL L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DILIFTGGLGPTKDDLTKETIAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 ++GAT N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LNGATVFANDHGMAPGMGVNKNRKSYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + E Y L ++ + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L VP +L GAVS+E A LA+ V+ + +D G+S TGVA Sbjct: 299 KGGVICYHNDVKQYVLRVPEEVLH---TDGAVSKECARYLAENVKDVLKADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE+K G VFVGL+ + PT V+ LNL G+R+ IR RT K Sbjct: 356 GPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAK 399 >ref|NP_657747.1| CinA, Competence-damaged protein [Bacillus anthracis A2012] ref|NP_846163.1| competence/damage-inducible protein CinA [Bacillus anthracis str. Ames] sp|Q81WQ3|CINA_BACAA CinA-like protein gb|AAP27649.1| competence/damage-inducible protein CinA [Bacillus anthracis str. Ames] Length = 412 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/404 (48%), Positives = 269/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQQAIE+A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +A+SL L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DMLIFTGGLGPTKDDLTKETIASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 +DGAT N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + Y L + + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGGFFYGYDQEFLHDKAIVLLKKKGLTLACAESLTGGLFGNQVTESAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L+VP +L GAVS+E A LA+ V+ + ++D G+S TGVA Sbjct: 299 KGGVICYHNDVKQHVLHVPEEVL---FTDGAVSKECARYLAENVKELLEADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VFVGLA + PT V+ LNL G+R+ IR R+ K Sbjct: 356 GPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAK 399 >ref|NP_243251.1| competence-damage inducible protein [Bacillus halodurans] sp|Q9KAA5|CINA_BACHD CinA-like protein pir||A83948 competence-damage inducible protein cinA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06104.1| competence-damage inducible protein [Bacillus halodurans] Length = 420 Score = 366 bits (940), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/404 (47%), Positives = 266/404 (65%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 MKAE+IAVG+ELLLGQI N+N QFLS +LA G+DVF+ +VVGDN++RLQ+ +EIA R+ Sbjct: 1 MKAEVIAVGSELLLGQIANTNGQFLSQQLAKAGVDVFYHSVVGDNATRLQETLEIASERS 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 ++I+ TGG+GPT+DDLTK+ +A+ L + L ID++A++ + FF++R + MTENNRKQAL+ Sbjct: 61 ELIILTGGLGPTKDDLTKEVVASFLHKELVIDEVALEQIVSFFEKRNLPMTENNRKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 + AT N Y++LPGPPREM+PM T Q P+L H G++ I Sbjct: 121 LKEATIFQNHYGMAPGMATIHQGVTYVLLPGPPREMRPMVTEQVIPFLSSHV--GDLQII 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE +L DLI QS+PTIAP A EGEVT+R++ K E +A L+ Sbjct: 179 SRVLRFFGIGESKLETELEDLIDGQSNPTIAPLASEGEVTLRLTVKHHDETQAALLLDET 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I+E + + Y + L + +V + GL+L++AES TGGL ITNIPG+++ F Sbjct: 239 ERKIRERVGHYFYGYDETSLMEKLVSCLTKTGLSLASAESLTGGLFGARITNIPGASACF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 L I Y+N+MK+ LNVP +LE GAVS E A +A V+ + +D +S TGVA Sbjct: 299 LAAITTYTNDMKQSWLNVPPHVLE---QHGAVSPECAIAMAQGVKKLTKADVTISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VF+GL R + L L G+RE IR RT+K Sbjct: 356 GPSPSEGKEPGTVFIGLCFRDDEPEAITLQLSGSREQIRERTLK 399 >gb|AAB47708.1| CinA [Bacillus subtilis] Length = 416 Score = 343 bits (881), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 183/403 (45%), Positives = 258/403 (64%), Gaps = 5/403 (1%) Query: 2 KAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRAD 61 KAEIIAVG+ELLLGQI N+NAQF+S +LA +G++VF+ T VGDN RL+Q I IA R+D Sbjct: 6 KAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSD 65 Query: 62 VILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALII 121 I+F+GG+GPT+DDLTK+ +A +LGR L ++ A ++ +F K M+ NNRKQAL+I Sbjct: 66 FIIFSGGLGPTKDDLTKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVI 125 Query: 122 DGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIYS 181 +G+ L N +YY++LPGPP E++PMF +AKP L + + E I S Sbjct: 126 EGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSELRPMFENEAKPLLLKKMGSNE-KIVS 184 Query: 182 KMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVLE 241 +L+F GIGES LE L D+I Q++PTIAP A +GEVT+R++ K E+E + L+ E Sbjct: 185 TVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLLKETE 244 Query: 242 TTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMFL 301 I E + E Y D L + + + G+T+SAAES TGGL E +T+ G++ +F Sbjct: 245 AVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFA 304 Query: 302 GGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVAG 361 GG+VCY+N++K+ +L V L D GAVS+E A LA V+ + SD G+S TGVAG Sbjct: 305 GGVVCYTNDVKQNVLGVKKETL---DRFGAVSKECASELAKGVQKLTGSDIGISFTGVAG 361 Query: 362 PGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 P E G VF+G++ G+ +V+E + G+R IR R K Sbjct: 362 PDAQEGHEPGHVFIGISANGKE-EVHEFHFAGSRTGIRKRGAK 403 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 568,813,199 Number of extensions: 22428048 Number of successful extensions: 59548 Number of sequences better than 1.0e-05: 677 Number of HSP's gapped: 58745 Number of HSP's successfully gapped: 678 Length of query: 429 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 301 Effective length of database: 409,704,906 Effective search space: 123321176706 Effective search space used: 123321176706 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 127 (53.5 bits)