BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0009.p (347 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAD56687.1| RecA protein [Bacillus amyloliquefaciens] 514 e-144 ref|NP_243249.1| multifunctional protein involved in homologous ... 504 e-141 ref|NP_389576.1| multifunctional SOS repair regulator [Bacillus ... 503 e-141 ref|NP_692545.1| RecA [Oceanobacillus iheyensis HTE831] >gi|3017... 501 e-141 emb|CAD56684.1| RecA2 protein [Bacillus megaterium] 501 e-140 >emb|CAD56687.1| RecA protein [Bacillus amyloliquefaciens] Length = 347 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 252/320 (78%), Positives = 280/320 (87%), Gaps = 2/320 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ VPS P+GRIIEVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNI+ELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDI+VVDS AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAVDIVVVDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GNDV+GN+T+IKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTRIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++D+GTE+DIV KSG+WYSYE ERLGQGREN+KQFL Sbjct: 248 KVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNL 320 KE++DI L+I+ +IRE L Sbjct: 308 KENKDIMLMIQEQIREHYGL 327 >ref|NP_243249.1| multifunctional protein involved in homologous recombination [Bacillus halodurans] sp|Q9KAA7|RECA_BACHD RecA protein (Recombinase A) pir||G83947 multifunctional protein involved in homologous recombination recA [imported] - Bacillus halodurans (strain C-125) dbj|BAB06102.1| multifunctional protein involved in homologous recombination [Bacillus halodurans] Length = 349 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/321 (77%), Positives = 279/321 (86%), Gaps = 2/321 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MALRQIEKQFGKGS+MKLGE +V + S P+GR+IEVYGPESSG Sbjct: 10 MALRQIEKQFGKGSIMKLGEQAEQRVSTISSGALALDIALGVGGYPRGRVIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQRNGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGA+D+IV+DS AALVPKAEIEG+MGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAIDVIVIDSV--AALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E++K GND+VGN+TKIKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKTKIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPFKQA+VDIMYGEGIS+EGS++DI +E+DIV KSGAWYS+ ERLGQGREN+KQFL Sbjct: 248 KVAPPFKQAEVDIMYGEGISREGSILDIASELDIVQKSGAWYSFNDERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNLS 321 KE+ + A IE++IRE L+ Sbjct: 308 KENPEAAEEIESRIREHYGLN 328 >ref|NP_389576.1| multifunctional SOS repair regulator [Bacillus subtilis] sp|P16971|RECA_BACSU RecA protein (Recombinase A) pir||RQBSEE recombination protein recA - Bacillus subtilis emb|CAA36377.1| unnamed protein product [Bacillus subtilis] emb|CAB13567.1| multifunctional SOS repair regulator [Bacillus subtilis subsp. subtilis str. 168] Length = 347 Score = 503 bits (1294), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/320 (77%), Positives = 277/320 (86%), Gaps = 3/320 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ VPS P+GRIIEVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ +AFIDAEHALDP YA LGVNI+ELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQQ-QRTSAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEA 128 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDI+VVDS AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 129 LVRSGAVDIVVVDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIA 186 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GNDV+GN+TKIKVVKN Sbjct: 187 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKN 246 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++D+GTE+DIV KSG+WYSYE ERLGQGREN+KQFL Sbjct: 247 KVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFL 306 Query: 301 KEHQDIALLIENKIREASNL 320 KE++DI L+I+ +IRE L Sbjct: 307 KENKDIMLMIQEQIREHYGL 326 >ref|NP_692545.1| RecA [Oceanobacillus iheyensis HTE831] sp|Q8CXG7|RECA_OCEIH RecA protein (Recombinase A) dbj|BAC13580.1| multifunctional protein involved in homologous recombination (recombinase) [Oceanobacillus iheyensis HTE831] Length = 347 Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/323 (75%), Positives = 277/323 (85%), Gaps = 2/323 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MALRQIEKQFGKGS+MK+GE+ K+ +PS P+GR++E+YGPESSG Sbjct: 10 MALRQIEKQFGKGSIMKMGENEIPKIATIPSGSLALDVALGIGGYPRGRVVEIYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAE QK GGQAAFIDAEHALDP YA ALGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEAQKQGGQAAFIDAEHALDPVYAKALGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDIIVVDS AALVPKAEIEG+MGDSHVGLQARLMSQALRKLSGAINKS T A Sbjct: 130 LVRSGAVDIIVVDSV--AALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTTA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E++K+GND VGN+ +IKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKLGNDAVGNKARIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPFKQA+VDIMYG+GISKEG ++DIG+++DIV KSGAWYSY +RLGQGREN+KQ+L Sbjct: 248 KVAPPFKQAEVDIMYGKGISKEGEVLDIGSDLDIVMKSGAWYSYNNDRLGQGRENAKQYL 307 Query: 301 KEHQDIALLIENKIREASNLSTI 323 KEH+++ I IR+ L + Sbjct: 308 KEHEEVLTEIHQSIRQHYELDKV 330 >emb|CAD56684.1| RecA2 protein [Bacillus megaterium] Length = 345 Score = 501 bits (1289), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/320 (76%), Positives = 274/320 (85%), Gaps = 2/320 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ +PS P+GR++EVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEQTEKRISTIPSGSLALDIALGVGGYPRGRVVEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDIIVVDS AALVPKAEIEG+MGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAVDIIVVDSV--AALVPKAEIEGEMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GND+VGN+T+IKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKTRIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++DI +E+DIV KSG+WYSY ERLGQGREN+KQFL Sbjct: 248 KVAPPFRAAEVDIMYGEGISKEGEILDIASELDIVQKSGSWYSYNDERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNL 320 KE+ DI I ++RE L Sbjct: 308 KENTDIRQEIAGQVREHHGL 327 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 431,030,659 Number of extensions: 16687442 Number of successful extensions: 53627 Number of sequences better than 1.0e-05: 1575 Number of HSP's gapped: 51928 Number of HSP's successfully gapped: 1581 Length of query: 347 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 221 Effective length of database: 415,135,104 Effective search space: 91744857984 Effective search space used: 91744857984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)