BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0005.p (86 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389580.1| spoVS [Bacillus subtilis] >gi|1174408|sp|P45693... 157 7e-38 ref|NP_692548.1| spore coat dehydratation and assembly protein [... 156 1e-37 ref|ZP_00182562.1| hypothetical protein Exigu212201 [Exiguobacte... 155 2e-37 ref|NP_348442.1| Stage V sporulation protein, spoVS [Clostridium... 154 5e-37 ref|NP_243241.1| stage V sporulation protein S [Bacillus halodur... 153 1e-36 >ref|NP_389580.1| spoVS [Bacillus subtilis] sp|P45693|SP5S_BACSU Stage V sporulation protein S pir||E69716 spore coat dehydratation and assembly protein spoVS - Bacillus subtilis gb|AAA86526.1| SpoVS emb|CAB13571.1| spoVS [Bacillus subtilis subsp. subtilis str. 168] Length = 86 Score = 157 bits (397), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 79/86 (91%), Positives = 85/86 (98%) Query: 1 MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 M++LKVSAKS+PNSVAGALAGVLRERG+AE+QAIGAGALNQAVKAVAIARGFVAPSGVDL Sbjct: 1 MEILKVSAKSSPNSVAGALAGVLRERGAAEIQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86 ICIPAFTDI IDGE+RTAIKLIVEPR Sbjct: 61 ICIPAFTDIQIDGEERTAIKLIVEPR 86 >ref|NP_692548.1| spore coat dehydratation and assembly protein [Oceanobacillus iheyensis HTE831] dbj|BAC13583.1| spore coat dehydratation and assembly protein [Oceanobacillus iheyensis HTE831] Length = 86 Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/86 (90%), Positives = 84/86 (97%) Query: 1 MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 M+VLKVSAKSNPNSVAGALA VLRERG+AE+QAIGAGALNQ+VKAVAIARGFVAPSGVDL Sbjct: 1 MEVLKVSAKSNPNSVAGALANVLRERGTAEIQAIGAGALNQSVKAVAIARGFVAPSGVDL 60 Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86 ICIPAFTDI+ID E+RTAIKLIVEPR Sbjct: 61 ICIPAFTDILIDNEERTAIKLIVEPR 86 >ref|ZP_00182562.1| hypothetical protein Exigu212201 [Exiguobacterium sp. 255-15] Length = 86 Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/86 (88%), Positives = 85/86 (98%) Query: 1 MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 MDVLKVSAKSNPN+VAGALAGVLRE+GS E+QAIGAGALNQ+VKAVAIARGFVAP+G+DL Sbjct: 1 MDVLKVSAKSNPNAVAGALAGVLREKGSVEIQAIGAGALNQSVKAVAIARGFVAPAGMDL 60 Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86 ICIPAFTDI+IDGE+RTAIKLI+EPR Sbjct: 61 ICIPAFTDIMIDGEERTAIKLIIEPR 86 >ref|NP_348442.1| Stage V sporulation protein, spoVS [Clostridium acetobutylicum] pir||C97124 stage V sporulation protein, spoVS [imported] - Clostridium acetobutylicum gb|AAK79782.1| Stage V sporulation protein, spoVS [Clostridium acetobutylicum] Length = 86 Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 75/86 (87%), Positives = 85/86 (98%) Query: 1 MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 M+VLKVSAKSNPNSVAGALAGVLRERG+AE+QAIGAGA+NQA+KA+AIARGFVAPSG+DL Sbjct: 1 MEVLKVSAKSNPNSVAGALAGVLRERGAAEIQAIGAGAINQAIKAIAIARGFVAPSGIDL 60 Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86 +CIPAFTDI IDGE+RTAIKLIV+PR Sbjct: 61 VCIPAFTDIDIDGEERTAIKLIVQPR 86 >ref|NP_243241.1| stage V sporulation protein S [Bacillus halodurans] pir||G83946 stage V sporulation protein S spoVS [imported] - Bacillus halodurans (strain C-125) dbj|BAB06094.1| stage V sporulation protein S [Bacillus halodurans] Length = 86 Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/86 (86%), Positives = 84/86 (97%) Query: 1 MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60 M+VLKVSAKS PNSVAGALAGV+RERG+AE+QAIGAGALNQ++KA+AIARGFVAPSG+DL Sbjct: 1 MEVLKVSAKSTPNSVAGALAGVIRERGAAEIQAIGAGALNQSIKAIAIARGFVAPSGIDL 60 Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86 +CIPAFTDI IDGE+RTAIKLIVEPR Sbjct: 61 VCIPAFTDIEIDGEERTAIKLIVEPR 86 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 108,839,525 Number of extensions: 3524493 Number of successful extensions: 10332 Number of sequences better than 1.0e-05: 22 Number of HSP's gapped: 10332 Number of HSP's successfully gapped: 22 Length of query: 86 Length of database: 757,237,578 Length adjustment: 55 Effective length of query: 31 Effective length of database: 607,907,133 Effective search space: 18845121123 Effective search space used: 18845121123 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)