BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0003.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00181469.1| hypothetical protein Mther055301 [Moorella th... 197 1e-49 ref|ZP_00180670.1| hypothetical protein Mther136901 [Moorella th... 195 5e-49 emb|CAD42070.1| hypothetical protein [Escherichia coli] 195 6e-49 ref|NP_228186.1| hypothetical protein [Thermotoga maritima] >gi|... 192 5e-48 ref|ZP_00098174.1| COG4869: Propanediol utilization protein [Des... 190 2e-47 >ref|ZP_00181469.1| hypothetical protein Mther055301 [Moorella thermoacetica ATCC 39073] Length = 188 Score = 197 bits (501), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 86/157 (54%), Positives = 122/157 (77%) Query: 14 IHLTQEHVEALFGPGYQLTEFKPLSQPGQFAANEQVAVIGTKGKFDKVRILGPVRPASQL 73 +HLT+EH++ LFGPGY+LT+ + + QPGQFAA E V ++G KG +KVR+LGP+R +Q+ Sbjct: 1 MHLTREHLQTLFGPGYELTKLRDVVQPGQFAAKETVTIVGPKGVLEKVRVLGPLRSYTQV 60 Query: 74 EVSRTDAFSLGVKAPVRESGHIEGTPGITIKGPAGELELETGVIVAARHIHFHTSEAEAW 133 E+SRTD+F LGV P+R+SG EG+PG + GPAG + L+ GVI+A RHIH HT EA+ + Sbjct: 61 EISRTDSFKLGVNPPIRDSGDHEGSPGCVLVGPAGVVTLKQGVIIALRHIHMHTDEAKRY 120 Query: 134 GIADKQMLKVRLGGERGLILENVIARVSDNFKLDMHI 170 G+ DK ++ V++GGERGLI NV+ RV+ NF+L+ H+ Sbjct: 121 GLKDKDLVTVQVGGERGLIFTNVLVRVNPNFRLEFHV 157 >ref|ZP_00180670.1| hypothetical protein Mther136901 [Moorella thermoacetica ATCC 39073] Length = 200 Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 90/166 (54%), Positives = 122/166 (73%) Query: 5 VPVGVSARHIHLTQEHVEALFGPGYQLTEFKPLSQPGQFAANEQVAVIGTKGKFDKVRIL 64 VPVGVS RHIHL ++ ++ LFGPGY+LT ++ LSQPG++AA E V ++G +G + VR+L Sbjct: 14 VPVGVSNRHIHLCRQDLDTLFGPGYELTVYRQLSQPGEYAARETVTIVGPRGVLEGVRVL 73 Query: 65 GPVRPASQLEVSRTDAFSLGVKAPVRESGHIEGTPGITIKGPAGELELETGVIVAARHIH 124 GPVR SQ+E++ TD F LG+K PVRESG +EGTPGI + GP+G L L GVI+AARHIH Sbjct: 74 GPVRSYSQVEIAMTDGFRLGLKPPVRESGDLEGTPGIAVVGPSGALTLHRGVILAARHIH 133 Query: 125 FHTSEAEAWGIADKQMLKVRLGGERGLILENVIARVSDNFKLDMHI 170 A + + D Q ++V + G RG+I NVI RVS NF+L++H+ Sbjct: 134 MEAERAASLNLHDDQRVQVLVPGMRGMIFNNVIVRVSPNFRLELHL 179 >emb|CAD42070.1| hypothetical protein [Escherichia coli] Length = 206 Score = 195 bits (495), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 93/167 (55%), Positives = 117/167 (70%) Query: 4 TVPVGVSARHIHLTQEHVEALFGPGYQLTEFKPLSQPGQFAANEQVAVIGTKGKFDKVRI 63 T+PVGVS RH+HL+Q+ VEALFG GYQLT FKPL QPGQFAA E V V+G KG VR+ Sbjct: 20 TIPVGVSNRHVHLSQQDVEALFGVGYQLTPFKPLRQPGQFAAEECVTVVGPKGSLTHVRV 79 Query: 64 LGPVRPASQLEVSRTDAFSLGVKAPVRESGHIEGTPGITIKGPAGELELETGVIVAARHI 123 LGPVRP SQLE+SR D F+LG+KAPVRESG +E + GP G +EL + VI A RHI Sbjct: 80 LGPVRPTSQLEISRADCFTLGIKAPVRESGQLENAGDALLVGPKGHVELHSQVICAWRHI 139 Query: 124 HFHTSEAEAWGIADKQMLKVRLGGERGLILENVIARVSDNFKLDMHI 170 H +A +++ Q + VR GER L + V+ RV ++F L++HI Sbjct: 140 HMSPQDARLLNVSNGQKVSVRSHGERQLTFDEVVVRVRNDFALELHI 186 >ref|NP_228186.1| hypothetical protein [Thermotoga maritima] pir||E72385 hypothetical protein TM0375 - Thermotoga maritima (strain MSB8) gb|AAD35462.1| hypothetical protein [Thermotoga maritima] Length = 210 Score = 192 bits (487), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 91/165 (55%), Positives = 122/165 (73%), Gaps = 1/165 (0%) Query: 7 VGVSARHIHLTQEHVEALFGPGYQLTEFKPLSQPGQFAANEQVAVIGTKGKFDKVRILGP 66 VGVS RH+HL++E +E LFG GY+LT K L QPGQ+AA E V ++G KG + VR+LGP Sbjct: 25 VGVSNRHVHLSREDLETLFGEGYELTPVKELRQPGQYAAKETVTIVGPKGAIENVRVLGP 84 Query: 67 VRPASQLEVSRTDAFSLGVKAPVRESGHIEGTPGITIKGPAGELELETGVIVAARHIHFH 126 VR +Q+E+SRTDAF LGV+ PVR+SG +EGTPGI I GP G L E GVI+A RHIH H Sbjct: 85 VRKETQVEISRTDAFRLGVRPPVRDSGDLEGTPGIVIIGPNGILVKEKGVIIAKRHIHMH 144 Query: 127 TSEAEAWGIADKQMLKVRL-GGERGLILENVIARVSDNFKLDMHI 170 +AE +G+ DK ++KV + G+R LI ++V+ RV ++F L+ H+ Sbjct: 145 PKDAEYYGVKDKDIVKVIVESGDRRLIFDDVLIRVREDFALEFHV 189 >ref|ZP_00098174.1| COG4869: Propanediol utilization protein [Desulfitobacterium hafniense] Length = 207 Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 86/166 (51%), Positives = 120/166 (72%) Query: 5 VPVGVSARHIHLTQEHVEALFGPGYQLTEFKPLSQPGQFAANEQVAVIGTKGKFDKVRIL 64 VPVG+S RH+HL++EH+E LFG G+QLT K LSQPGQFA E V ++G KG +R+L Sbjct: 21 VPVGISNRHVHLSEEHIEILFGAGHQLTRTKDLSQPGQFACEETVTLVGPKGTMANIRVL 80 Query: 65 GPVRPASQLEVSRTDAFSLGVKAPVRESGHIEGTPGITIKGPAGELELETGVIVAARHIH 124 GP R A+Q+E++ TD F LGVK PVR+SG + TPG+ + GPAG++++E G I+AARHIH Sbjct: 81 GPARKATQVELAATDTFKLGVKPPVRDSGDLSETPGLELVGPAGKVQIEAGTIIAARHIH 140 Query: 125 FHTSEAEAWGIADKQMLKVRLGGERGLILENVIARVSDNFKLDMHI 170 +AE +G+ D +KV++ G R + E V+ RV+ N+ LDMH+ Sbjct: 141 MTPQDAEKYGLKDGDHVKVQVTGPRAGVFERVLIRVNPNYALDMHV 186 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 248,725,557 Number of extensions: 9756554 Number of successful extensions: 18239 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 18212 Number of HSP's successfully gapped: 27 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)