BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0001.p (517 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00117945.1| COG0513: Superfamily II DNA and RNA helicases... 495 e-139 ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tep... 467 e-130 ref|ZP_00098890.1| COG0513: Superfamily II DNA and RNA helicases... 446 e-124 ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroide... 443 e-123 ref|ZP_00045723.1| COG0513: Superfamily II DNA and RNA helicases... 423 e-117 >ref|ZP_00117945.1| COG0513: Superfamily II DNA and RNA helicases [Cytophaga hutchinsonii] Length = 446 Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/380 (62%), Positives = 294/380 (77%), Gaps = 1/380 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M F DL LI ILKALS+E YT+PTPIQ ++IP L G+D+LGCAQTGTGKTAAFS+PI+ Sbjct: 1 MLFQDLKLIDPILKALSEEGYTTPTPIQSQAIPYVLQGKDLLGCAQTGTGKTAAFSIPIL 60 Query: 61 QLLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQER 120 QLLS + S T KR IRSLI+TPTRELA+QI E++QAY K+T + ST I GGV+Q Q Sbjct: 61 QLLSVKKS-TDRKRPIRSLIVTPTRELAIQIGESLQAYGKYTGLTSTVIFGGVNQSRQVT 119 Query: 121 ALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPSK 180 AL G D+L+ATPGRL+DL+ Q L++++I VLDEADRMLDMGF+HDV+R++ +P+K Sbjct: 120 ALQNGIDVLVATPGRLLDLMNQGFISLRHIEIFVLDEADRMLDMGFVHDVRRLLLALPAK 179 Query: 181 KQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRLL 240 +Q+LFFSATMP EI L +LVNP K+E+TPVSST D I+Q +Y ++ GNK L +L Sbjct: 180 RQSLFFSATMPPEIVKLADNILVNPSKVEVTPVSSTADTIKQFMYFVDRGNKNNLLVEVL 239 Query: 241 QDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVLV 300 QD I + LVFTRTK AD+V + L + I A+AIHGNKSQN RQNAL NFK+ TTR+LV Sbjct: 240 QDPKIKTCLVFTRTKHVADKVVKMLAEHKIKAEAIHGNKSQNARQNALTNFKAQTTRILV 299 Query: 301 ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKDI 360 ATDIAARGID+D L VIN+ +PNIPETYVHRIGRTGRAG G A S C+AEE YLKDI Sbjct: 300 ATDIAARGIDVDNLEFVINYEIPNIPETYVHRIGRTGRAGAKGTAFSFCDAEEKAYLKDI 359 Query: 361 QKLIGKTIPEVKDHAYPMSE 380 +KLI K IP + +H YP+ + Sbjct: 360 EKLISKKIPVIDEHPYPLMD 379 >ref|NP_661925.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] gb|AAM72267.1| ATP-dependent RNA helicase DeaD [Chlorobium tepidum TLS] Length = 414 Score = 467 bits (1202), Expect = e-130, Method: Compositional matrix adjust. Identities = 228/378 (60%), Positives = 286/378 (75%), Gaps = 1/378 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 M F+ L +I + KAL++E Y SPTPIQ+E+IP L G D+L CAQTGTGKTAAF+LP++ Sbjct: 1 MPFSALGIIDHLRKALAEEGYNSPTPIQKEAIPVILEGNDLLACAQTGTGKTAAFALPVL 60 Query: 61 QLLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQER 120 Q L Q + G KR+IR L+LTPTRELA+QI E+ AY + T + +T I GGV+Q Q Sbjct: 61 QRL-HQSRMHGEKRKIRCLVLTPTRELAIQIGESFTAYGRHTGLINTVIFGGVNQNPQTA 119 Query: 121 ALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPSK 180 L +G DIL+ATPGRL+DLI Q H L+ ++ VLDEADRMLDMGFIHD++R++A +P K Sbjct: 120 RLVRGVDILVATPGRLLDLIGQGHLHLRDIEYFVLDEADRMLDMGFIHDIRRVLAVLPKK 179 Query: 181 KQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRLL 240 +Q+LFFSATMP EI L +L NP ++ +TPVSSTV+ I Q + ++ NK L LL Sbjct: 180 RQSLFFSATMPPEIIKLSAAILHNPKEVMVTPVSSTVEIINQQILFVDRENKNSLLAHLL 239 Query: 241 QDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVLV 300 ++++I SALVFTRTK GAD+V R L ++ITA+AIHGNKSQN RQ AL NFK+ TRVLV Sbjct: 240 KERNIESALVFTRTKHGADKVARFLAHHDITAEAIHGNKSQNARQRALGNFKTRQTRVLV 299 Query: 301 ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKDI 360 ATDIAARGIDIDEL +VIN +LPNIPETYVHRIGRTGRAG G A S C AEE YL+DI Sbjct: 300 ATDIAARGIDIDELEYVINIDLPNIPETYVHRIGRTGRAGNRGAAYSFCNAEEKAYLRDI 359 Query: 361 QKLIGKTIPEVKDHAYPM 378 +KLI + IP ++DH +PM Sbjct: 360 EKLIARKIPVIEDHPFPM 377 >ref|ZP_00098890.1| COG0513: Superfamily II DNA and RNA helicases [Desulfitobacterium hafniense] Length = 428 Score = 446 bits (1146), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/376 (56%), Positives = 271/376 (72%) Query: 3 FNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPIIQL 62 N+L +I I KAL+ + Y+ TPIQ E+IP L G D+LGCAQTGTGKTAAF++PI+Q Sbjct: 6 LNELKIINPIQKALAAQGYSEATPIQAEAIPHLLEGLDLLGCAQTGTGKTAAFAIPILQS 65 Query: 63 LSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQERAL 122 L+ + GKR+IR+L+L PTRELA QI+E+ AY +R+ I GGV Q Q R L Sbjct: 66 LAMGQGLLKGKRQIRALVLAPTRELATQIAESFTAYGVNLPLRTLVIFGGVGQAPQTRKL 125 Query: 123 SQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPSKKQ 182 +G DIL+ATPGRL+DLI Q DL +V+ VLDE D+MLDMG +HDVKRII +P ++Q Sbjct: 126 EKGIDILVATPGRLLDLINQGFIDLSHVEHFVLDETDQMLDMGMLHDVKRIITYLPRERQ 185 Query: 183 TLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRLLQD 242 + FSATMP EI L T+L PVKI +TP S +D IEQ VY ++ NK L L++ Sbjct: 186 NMLFSATMPVEIEKLADTILKGPVKIAMTPEFSPLDIIEQEVYFVDKANKAALLTYWLKN 245 Query: 243 KSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVLVAT 302 S LVF+RTK GAD++ ++L + TA AIHGNKSQ +R+ AL FK TR+LVAT Sbjct: 246 NEYDSVLVFSRTKHGADKIVKELNKKGFTAVAIHGNKSQANREQALHAFKKRKTRILVAT 305 Query: 303 DIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKDIQK 362 DIAARG+DI ELSHVIN+NLP +PETY+HRIGRTGRAG+ G AI+ C+ EE P L+DIQK Sbjct: 306 DIAARGLDIQELSHVINYNLPEVPETYIHRIGRTGRAGLGGKAITFCDFEEKPLLRDIQK 365 Query: 363 LIGKTIPEVKDHAYPM 378 IGKT+PEVK+H YP+ Sbjct: 366 RIGKTLPEVKEHPYPL 381 >ref|NP_810798.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] gb|AAO76992.1| putative ATP-dependent RNA helicase [Bacteroides thetaiotaomicron VPI-5482] Length = 374 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/368 (60%), Positives = 275/368 (74%), Gaps = 1/368 (0%) Query: 1 MTFNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPII 60 MTF +LN+ ILKA+ ++ YT PTPIQE++IP ALA +D+LGCAQTGTGKTA+F++PII Sbjct: 1 MTFKELNITEPILKAIEEKGYTVPTPIQEKAIPVALAKKDILGCAQTGTGKTASFAIPII 60 Query: 61 QLLSQQPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQER 120 Q L G + I++LILTPTRELALQISE I+ YSK+T IR I GGV+Q+ Q Sbjct: 61 QHLHLNKG-EGKRSEIKALILTPTRELALQISECIEDYSKYTRIRHGVIFGGVNQRPQVD 119 Query: 121 ALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPSK 180 L +G DIL+ATPGRL+DL+ Q H L +Q VLDEADRMLDMGFIHD+KRI+ K+P + Sbjct: 120 MLHKGIDILVATPGRLLDLMNQGHIRLDNIQYFVLDEADRMLDMGFIHDIKRILPKLPKE 179 Query: 181 KQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRLL 240 KQTLFFSATMP I L +LL NPVKI +TP SSTVD I+Q VY +E K L +L Sbjct: 180 KQTLFFSATMPDTIIALTNSLLKNPVKIYVTPKSSTVDSIKQLVYFVEKKEKSLLLISIL 239 Query: 241 QDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVLV 300 Q S L+F+RTK AD++ + L + I +QAIHGNKSQ RQ+AL NFKSG TRV+V Sbjct: 240 QKSEDRSVLIFSRTKHNADKIVKILGKAGIGSQAIHGNKSQAARQSALGNFKSGKTRVMV 299 Query: 301 ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKDI 360 ATDIA+RGIDI+EL VIN++LP++PETYVHRIGRTGRAG +G+A++ C EE + DI Sbjct: 300 ATDIASRGIDINELPLVINYDLPDVPETYVHRIGRTGRAGNAGMALTFCSQEERKQINDI 359 Query: 361 QKLIGKTI 368 QKL GK + Sbjct: 360 QKLTGKKL 367 >ref|ZP_00045723.1| COG0513: Superfamily II DNA and RNA helicases [Magnetococcus sp. MC-1] Length = 439 Score = 423 bits (1087), Expect = e-117, Method: Compositional matrix adjust. Identities = 214/385 (55%), Positives = 273/385 (70%), Gaps = 7/385 (1%) Query: 3 FNDLNLIPAILKALSQENYTSPTPIQEESIPAALAGRDVLGCAQTGTGKTAAFSLPIIQL 62 F LNL+ +L AL+Q YT+PTPIQ ++IP LAGRD+LG AQTGTGKTAAF+LPI+ Sbjct: 4 FASLNLVKPLLNALTQAGYTTPTPIQAQAIPHLLAGRDLLGIAQTGTGKTAAFALPILNK 63 Query: 63 LSQ---QPSVTGGKRRIRSLILTPTRELALQISENIQAYSKFTNIRSTAIVGGVSQKAQE 119 LSQ +P+ R+LILTPTRELA QI +I Y K T + GGV ++ Q Sbjct: 64 LSQIKGRPAPNAP----RALILTPTRELASQIGNSIAVYGKHVPTTHTVVFGGVGKQPQI 119 Query: 120 RALSQGADILIATPGRLIDLITQKHADLQYVQILVLDEADRMLDMGFIHDVKRIIAKMPS 179 RALS+G DIL+ATPGRL+DL+ ++H L +Q+ VLDEADRMLDMGFIHD++RII +P+ Sbjct: 120 RALSRGVDILVATPGRLLDLMGERHVRLDQIQVFVLDEADRMLDMGFIHDIRRIIKVIPA 179 Query: 180 KKQTLFFSATMPTEISNLIKTLLVNPVKIEITPVSSTVDRIEQSVYLLENGNKQKQLNRL 239 K+ TL FSATMP +I+ L + LL NP K+E+TP S+TV+RI Q V ++ NK+ L + Sbjct: 180 KRHTLLFSATMPKDIAELAEGLLTNPAKVEVTPESTTVERITQKVLFVDKQNKRSLLKNV 239 Query: 240 LQDKSIVSALVFTRTKRGADRVTRDLTRNNITAQAIHGNKSQNDRQNALRNFKSGTTRVL 299 L+ +SI LVFTRTK GA+RV L ++ I + AIHGNKSQ+ R+ AL F+ G +VL Sbjct: 240 LEHESIEQVLVFTRTKHGANRVAEYLDKHRIASAAIHGNKSQSAREKALDGFRKGKLKVL 299 Query: 300 VATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGVAISLCEAEEIPYLKD 359 VATDIAARGID+ +SHVINF+LPN E+YVHRIGRT RAG G AIS C+AEE YL D Sbjct: 300 VATDIAARGIDVAGISHVINFDLPNESESYVHRIGRTARAGRDGNAISFCDAEERGYLLD 359 Query: 360 IQKLIGKTIPEVKDHAYPMSESAQA 384 I+K I +T+P DH + A A Sbjct: 360 IEKTIRQTVPVDIDHEFHCEVVANA 384 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.316 0.131 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 598,812,134 Number of extensions: 22119057 Number of successful extensions: 77763 Number of sequences better than 1.0e-05: 2514 Number of HSP's gapped: 72907 Number of HSP's successfully gapped: 2644 Length of query: 517 Length of database: 757,237,578 Length adjustment: 130 Effective length of query: 387 Effective length of database: 404,274,708 Effective search space: 156454311996 Effective search space used: 156454311996 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)