BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0276.0006.p
         (100 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_832591.1| hypothetical protein [Bacillus cereus ATCC 1457...    79   3e-14
ref|NP_656723.1| hypothetical protein predicted by GeneMark [Bac...    79   4e-14
ref|NP_979172.1| conserved hypothetical protein [Bacillus cereus...    79   4e-14

>ref|NP_832591.1| hypothetical protein [Bacillus cereus ATCC 14579]
 gb|AAP09792.1| hypothetical protein [Bacillus cereus ATCC 14579]
          Length = 102

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 61/83 (73%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCIYIAEKRQVGPEEVLVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY +  +   ++LELD+E
Sbjct: 66 LLLDREYNVNPFAARLQLELDDE 88


>ref|NP_656723.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
          A2012]
 ref|NP_845184.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
 gb|AAP26670.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
          Length = 102

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 62/83 (74%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCVYIAEKRQVGPEEVLVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY + ++   ++LELD+E
Sbjct: 66 LLLDREYNVNSFAARLQLELDDE 88


>ref|NP_979172.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS41780.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 102

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 62/83 (74%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCVYIAEKRQVGPEEVLVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY + ++   ++LELD+E
Sbjct: 66 LLLDREYNVNSFAARLQLELDDE 88


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 134,542,687
Number of extensions: 4540708
Number of successful extensions: 18685
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 18685
Number of HSP's successfully gapped: 3
Length of query: 100
Length of database: 757,237,578
Length adjustment: 67
Effective length of query: 33
Effective length of database: 575,325,945
Effective search space: 18985756185
Effective search space used: 18985756185
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)