BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0274.0004.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831536.1| GTP-binding protein hflX [Bacillus cereus ATCC ... 483 e-135 ref|NP_655693.1| FeoB, Ferrous iron transport protein B [Bacillu... 476 e-133 ref|NP_978232.1| GTP-binding protein [Bacillus cereus ATCC 10987... 436 e-121 ref|NP_470098.1| similar to ATP/GTP-binding protein [Listeria in... 389 e-106 ref|NP_464289.1| similar to ATP/GTP-binding protein [Listeria mo... 383 e-105 >ref|NP_831536.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579] gb|AAP08737.1| GTP-binding protein hflX [Bacillus cereus ATCC 14579] Length = 419 Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/415 (56%), Positives = 297/415 (71%) Query: 1 METVHQKAVIVGVQLQNDKDFAYSMEELRNLAAACELEVVGELSQKSSRINPAHYIGTGK 60 ME V Q+AV+VGV + N+ DFAYSMEEL NLA AC++EV+G+++Q R+NP+HYIG GK Sbjct: 1 MEEVLQRAVLVGVNVGNEDDFAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGK 60 Query: 61 IGXXXXXXXXXXXPIVIFNDELSPSQIRNLESALDRQVIDRTVLILNIFAERAKTKEAQL 120 I +VIFNDELSPSQIRNLE LD +VIDRT+LIL+IFA+RAKTKEAQL Sbjct: 61 IEEVAAYVQEIDANMVIFNDELSPSQIRNLEEDLDCKVIDRTILILDIFAQRAKTKEAQL 120 Query: 121 QVEVAQLQYMLPRLAGMRESXXXXXXXXXXXXXXXXETKLELDXXXXXXXXTALQLELXX 180 QVEVA LQYM+PRL G+RES E KLELD + L +L Sbjct: 121 QVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLELDRRKIEEQISVLNKDLEA 180 Query: 181 XXXXXXXXXXXXXXNEVPVVCLVGYTNTGKSSLMNTIMETYHPGSQKGVLAKDMLFATLE 240 NE+PVV LVGYTN GKS+ MN ++E Y+ +K V KDMLFATLE Sbjct: 181 LVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE 240 Query: 241 TSVRSIELPDRKTFLLTDTVGFVSQLPHHLVKAFRSTLEEVTEADLLIHVADISDPQVGQ 300 TSVR+I+LPD K+FLLTDTVGFVS+LPHHLVKAFRSTLEEV EADLLIHV D ++P Q Sbjct: 241 TSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQ 300 Query: 301 HIAVTEETLKALGADGIPAIKAYNKADLTELPYPVVKENTVTLSAKQKSGIAELIDLVRQ 360 I +T ETLK +G + IP I AYNK+D+ ++ P V+E+ V LSAK+ GI EL++++R Sbjct: 301 LIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRS 360 Query: 361 HVFNDYIRCEILVPFDRGSVVSYFNDHADVQEVSYEEQGTRLKLECRAADYERFK 415 H++ +Y +CE+L+P+D+G VVSYFN+HA V SYE +GT+L++EC+ +DYE++K Sbjct: 361 HIYKEYTKCEMLIPYDQGQVVSYFNNHAHVLSTSYENEGTKLQIECKTSDYEKYK 415 >ref|NP_655693.1| FeoB, Ferrous iron transport protein B [Bacillus anthracis A2012] ref|NP_844248.1| GTP-binding protein [Bacillus anthracis str. Ames] gb|AAP25734.1| GTP-binding protein [Bacillus anthracis str. Ames] Length = 419 Score = 476 bits (1224), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/415 (55%), Positives = 295/415 (71%) Query: 1 METVHQKAVIVGVQLQNDKDFAYSMEELRNLAAACELEVVGELSQKSSRINPAHYIGTGK 60 ME + Q+AV+VGV L N+ D AYSMEEL NLA AC++EV+G+++Q R+NP+HYIG GK Sbjct: 1 MEELLQRAVLVGVNLGNEDDSAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGK 60 Query: 61 IGXXXXXXXXXXXPIVIFNDELSPSQIRNLESALDRQVIDRTVLILNIFAERAKTKEAQL 120 I +VIFNDELSPSQIRNLE+ LD +VIDRT+LIL+IFA+RAKTKEAQL Sbjct: 61 IEEVAAYVNEVDANMVIFNDELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQL 120 Query: 121 QVEVAQLQYMLPRLAGMRESXXXXXXXXXXXXXXXXETKLELDXXXXXXXXTALQLELXX 180 QVEVA LQYM+PRL G+RES E KLELD + L +L Sbjct: 121 QVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLELDRRKIEEQISVLNKDLEA 180 Query: 181 XXXXXXXXXXXXXXNEVPVVCLVGYTNTGKSSLMNTIMETYHPGSQKGVLAKDMLFATLE 240 NE+PVV LVGYTN GKS+ MN ++E Y+ +K V KDMLFATLE Sbjct: 181 LVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE 240 Query: 241 TSVRSIELPDRKTFLLTDTVGFVSQLPHHLVKAFRSTLEEVTEADLLIHVADISDPQVGQ 300 TSVR+I+LP K+FLLTDTVGFVS+LPHHLVKAFRSTLEEV EADLLIHV D ++P Q Sbjct: 241 TSVRNIDLPGNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQ 300 Query: 301 HIAVTEETLKALGADGIPAIKAYNKADLTELPYPVVKENTVTLSAKQKSGIAELIDLVRQ 360 I +T ETLK +G + IP I AYNK+D+ ++ P V+E+ V LSAK+ GI EL++++R Sbjct: 301 LIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRS 360 Query: 361 HVFNDYIRCEILVPFDRGSVVSYFNDHADVQEVSYEEQGTRLKLECRAADYERFK 415 H++ +Y +CE+L+P+D+G VVSYFN HA V SYE +GT+L++EC+ +DYE++K Sbjct: 361 HIYKEYTKCEMLIPYDQGQVVSYFNTHAHVLSTSYENEGTKLEVECKTSDYEKYK 415 >ref|NP_978232.1| GTP-binding protein [Bacillus cereus ATCC 10987] gb|AAS40840.1| GTP-binding protein [Bacillus cereus ATCC 10987] Length = 401 Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/381 (56%), Positives = 270/381 (70%) Query: 1 METVHQKAVIVGVQLQNDKDFAYSMEELRNLAAACELEVVGELSQKSSRINPAHYIGTGK 60 ME + Q+AV+VGV L N+ DFAYSMEEL NLA AC++EV+G+++Q R+NP+HYIG GK Sbjct: 1 MEELLQRAVLVGVNLGNEDDFAYSMEELTNLAEACDVEVIGQVTQNLQRVNPSHYIGKGK 60 Query: 61 IGXXXXXXXXXXXPIVIFNDELSPSQIRNLESALDRQVIDRTVLILNIFAERAKTKEAQL 120 I +VIFNDELSPSQIRNLE+ LD +VIDRT+LIL+IFA+RAKTKEAQL Sbjct: 61 IEEVAAYVNEVGANMVIFNDELSPSQIRNLEADLDCKVIDRTILILDIFAQRAKTKEAQL 120 Query: 121 QVEVAQLQYMLPRLAGMRESXXXXXXXXXXXXXXXXETKLELDXXXXXXXXTALQLELXX 180 QVEVA LQYM+PRL G+RES E KLELD + L +L Sbjct: 121 QVEVAHLQYMMPRLIGLRESLGRQSGGVGTKNKGVGEKKLELDRRKIEEQISVLNKDLEA 180 Query: 181 XXXXXXXXXXXXXXNEVPVVCLVGYTNTGKSSLMNTIMETYHPGSQKGVLAKDMLFATLE 240 NE+PVV LVGYTN GKS+ MN ++E Y+ +K V KDMLFATLE Sbjct: 181 LVAQRQTQRKQRKKNEIPVVALVGYTNAGKSTTMNAMLEIYNGTEEKQVFEKDMLFATLE 240 Query: 241 TSVRSIELPDRKTFLLTDTVGFVSQLPHHLVKAFRSTLEEVTEADLLIHVADISDPQVGQ 300 TSVR+I+LPD K+FLLTDTVGFVS+LPHHLVKAFRSTLEEV EADLLIHV D ++P Q Sbjct: 241 TSVRNIDLPDNKSFLLTDTVGFVSKLPHHLVKAFRSTLEEVAEADLLIHVVDYANPNYEQ 300 Query: 301 HIAVTEETLKALGADGIPAIKAYNKADLTELPYPVVKENTVTLSAKQKSGIAELIDLVRQ 360 I +T ETLK +G + IP I AYNK+D+ ++ P V+E+ V LSAK+ GI EL++++R Sbjct: 301 LIDITNETLKKIGVENIPTIYAYNKSDMVDVEIPKVQEDRVYLSAKKHVGIEELVEMIRS 360 Query: 361 HVFNDYIRCEILVPFDRGSVV 381 H++ +Y +CE+L+P+D+G VV Sbjct: 361 HIYKEYTKCEMLIPYDQGQVV 381 >ref|NP_470098.1| similar to ATP/GTP-binding protein [Listeria innocua] pir||AD1527 ATP/GTP-binding protein homolog lin0756 [imported] - Listeria innocua (strain Clip11262) emb|CAC95988.1| lin0756 [Listeria innocua] Length = 418 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 210/412 (50%), Positives = 255/412 (61%), Gaps = 2/412 (0%) Query: 4 VHQKAVIVGVQLQNDKDFAYSMEELRNLAAACELEVVGELSQKSSRINPAHYIGTGKIGX 63 + + +IVGV Q KDF YSMEEL NLAAA +EVVGEL Q R N A Y+G GK+ Sbjct: 1 MEKNVLIVGVS-QKQKDFDYSMEELANLAAANNMEVVGELRQNIDRENRATYVGKGKVDE 59 Query: 64 XXXXXXXXXXPIVIFNDELSPSQIRNLESALDRQVIDRTVLILNIFAERAKTKEAQLQVE 123 ++IFNDELSPSQIRNLE AL+ +V+DRT LIL IFA RAKTKEAQLQV+ Sbjct: 60 IKGLAEMQDARLIIFNDELSPSQIRNLEEALELEVMDRTGLILAIFANRAKTKEAQLQVQ 119 Query: 124 VAQLQYMLPRLAGMRESXXXXXXXXXXXXXXXXETKLELDXXXXXXXXTALQLELXXXXX 183 +A+LQY LPR+ G E E K+E D LQ EL Sbjct: 120 IAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKHQIRHLQKELDMLVD 179 Query: 184 XXXXXXXXXXXNEVPVVCLVGYTNTGKSSLMNTIMETYHPGSQKGVLAKDMLFATLETSV 243 NE+PVV LVGYTN GKS+ MN ++ Y + K V KDMLFATLETSV Sbjct: 180 DREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETADKQVFEKDMLFATLETSV 239 Query: 244 RSIELPDRKTFLLTDTVGFVSQLPHHLVKAFRSTLEEVTEADLLIHVADISDPQVGQHIA 303 R I LPD K FLLTDTVGFVS+LPH LVKAFRSTLEE +ADLLIHV D SDP + Sbjct: 240 REIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMK 299 Query: 304 VTEETLKALGADGIPAIKAYNKADLTELP-YPVVKENTVTLSAKQKSGIAELIDLVRQHV 362 TEETLKA+G + +P I AYNKADL E YP ENT+ SA+++ + L +++R+ + Sbjct: 300 TTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQTENTIVFSAREEESLEFLTEVIRKEL 359 Query: 363 FNDYIRCEILVPFDRGSVVSYFNDHADVQEVSYEEQGTRLKLECRAADYERF 414 F Y + L+PF+ G+VV+Y NDHADV Y E GT + E AD ++ Sbjct: 360 FASYEKATFLIPFEAGNVVAYLNDHADVLATEYLENGTEIVAEISPADLQKL 411 >ref|NP_464289.1| similar to ATP/GTP-binding protein [Listeria monocytogenes EGD-e] pir||AB1170 ATP/GTP-binding protein homolog lmo0762 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98840.1| lmo0762 [Listeria monocytogenes] Length = 418 Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust. Identities = 206/412 (50%), Positives = 254/412 (61%), Gaps = 2/412 (0%) Query: 4 VHQKAVIVGVQLQNDKDFAYSMEELRNLAAACELEVVGELSQKSSRINPAHYIGTGKIGX 63 + +K +IVG+ Q KDF YSMEEL NLAAA +EVVGE+ Q R N A Y+G GK+ Sbjct: 1 MEKKVLIVGIS-QKQKDFDYSMEELANLAAANNMEVVGEIRQNIDRENRATYVGKGKVDE 59 Query: 64 XXXXXXXXXXPIVIFNDELSPSQIRNLESALDRQVIDRTVLILNIFAERAKTKEAQLQVE 123 ++IFNDELSPSQIRNLE AL+ V+DRT LIL IFA RAKTKEAQLQV+ Sbjct: 60 IKGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLILAIFANRAKTKEAQLQVQ 119 Query: 124 VAQLQYMLPRLAGMRESXXXXXXXXXXXXXXXXETKLELDXXXXXXXXTALQLELXXXXX 183 +A+LQY LPR+ G E E K+E D LQ EL Sbjct: 120 IAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDRRTIKHQIRHLQKELDMLVD 179 Query: 184 XXXXXXXXXXXNEVPVVCLVGYTNTGKSSLMNTIMETYHPGSQKGVLAKDMLFATLETSV 243 NE+PVV LVGYTN GKS+ MN ++ Y + K V KDMLFATLETSV Sbjct: 180 DREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYSETADKQVFEKDMLFATLETSV 239 Query: 244 RSIELPDRKTFLLTDTVGFVSQLPHHLVKAFRSTLEEVTEADLLIHVADISDPQVGQHIA 303 R I LPD K FLLTDTVGFVS+LPH LVKAFRSTLEE +ADLLIHV D SDP + Sbjct: 240 REIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEEARDADLLIHVVDYSDPHYKTMMK 299 Query: 304 VTEETLKALGADGIPAIKAYNKADLTELP-YPVVKENTVTLSAKQKSGIAELIDLVRQHV 362 TEETLK +G + +P I AYNKADL E YP NT+ SA+++ + L +++R+ + Sbjct: 300 TTEETLKVVGVEDVPVIYAYNKADLLEDEMYPKQTGNTIIFSAREEESLEFLTEVIRKEL 359 Query: 363 FNDYIRCEILVPFDRGSVVSYFNDHADVQEVSYEEQGTRLKLECRAADYERF 414 F Y + L+PF+ G VV+Y N+HAD+ E Y E GT++ E AD ++ Sbjct: 360 FASYEKATFLIPFEAGQVVAYLNEHADILETEYLENGTQIVAEVSPADLQKL 411 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.133 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 474,566,363 Number of extensions: 16496133 Number of successful extensions: 59451 Number of sequences better than 1.0e-05: 419 Number of HSP's gapped: 58730 Number of HSP's successfully gapped: 456 Length of query: 423 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 295 Effective length of database: 409,704,906 Effective search space: 120862947270 Effective search space used: 120862947270 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)